Carubv10000703m.g (Capsella rubella)
WRKY

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF03106 (WRKY) IPR003657 Carubv10000703m.g T355934_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
WRKY31
M07408_2.00 		Arabidopsis thaliana
NNNNHNNNNNDRGTCAACG
CGTTGACYHNNNNNDNNNN		 Dap-seq
OMalley et al.(2016)
WRKY31_col_a 		0.897 0.949
WRKY31
M07409_2.00 		Arabidopsis thaliana
NHWRGTCAACKNH
DNMGTTGACYWDN		 Dap-seq
OMalley et al.(2016)
WRKY31_colamp_a 		0.897 0.949
WRKY6
M07377_2.00 		Arabidopsis thaliana
DNNNHNDHNHNRGTCAACG
CGTTGACYNDNDHNDNNNH		 Dap-seq
OMalley et al.(2016)
WRKY6_col_a 		0.897 0.949
WRKY6
M07378_2.00 		Arabidopsis thaliana
NNHNWRGTCAACKNH
DNMGTTGACYWNDNN		 Dap-seq
OMalley et al.(2016)
WRKY6_colamp_a 		0.897 0.949
WRKY42
M07404_2.00 		Arabidopsis thaliana
NDWRGTCAACDNNNNDNNHNN
NNDNNHNNNNHGTTGACYWHN		 Dap-seq
OMalley et al.(2016)
WRKY42_col_a 		0.895 0.966
WRKY42
M07405_2.00 		Arabidopsis thaliana
HNDNNNWRGTCAACKNHNDD
HHNDNMGTTGACYWNNNHND		 Dap-seq
OMalley et al.(2016)
WRKY42_colamp_a 		0.895 0.966
WRKY47
M00732_2.00 		Arabidopsis thaliana
NNRGTCAACKN
NMGTTGACYNN		 PBM
Chang et al.(2013)
pTH7913 		0.890 0.915
WRKY47
M07402_2.00 		Arabidopsis thaliana
WRGTCAAMGNHVDK
MHBDNCKTTGACYW		 Dap-seq
OMalley et al.(2016)
WRKY47_col_a 		0.890 0.915
WRKY47
M07403_2.00 		Arabidopsis thaliana
NNNHWRGTCAACKNHNNNN
NNNNDNMGTTGACYWDNNN		 Dap-seq
OMalley et al.(2016)
WRKY47_colamp_a 		0.890 0.915
WRKY21
M02553_2.00 		Arabidopsis thaliana
NNRGTCAAMN
NKTTGACYNN		 PBM
Weirauch et al.(2014)
pTH7422 		0.810 0.593
WRKY21
M07389_2.00 		Arabidopsis thaliana
HAAAGTCAACNNH
DNNGTTGACTTTD		 Dap-seq
OMalley et al.(2016)
WRKY21_colamp_a 		0.810 0.593
WRKY21
M07390_2.00 		Arabidopsis thaliana
HAAAGTCAACK
MGTTGACTTTD		 Dap-seq
OMalley et al.(2016)
WRKY21_col 		0.810 0.593
For this family, TFs with SR scores > 0.808 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Carubv10000703m WRKY 291 349

Links

Other WRKY family TFs
Other Capsella rubella TFs

673 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
HELT Anolis carolinensis ENSACAG00000002389 N
ENSAMXG00000000740 Astyanax mexicanus ENSAMXG00000000740 N
ENSBTAP00000019570-D1 Bos grunniens ENSBTAP00000019570-D1 N
HELT Bos taurus ENSBTAG00000014704 N
HELT Callithrix jacchus ENSCJAG00000005863 N
Aan_R004205 Calypte anna Aan_R004205 N
HELT Canis familiaris ENSCAFG00000007599 N
ENSCPOG00000024816 Cavia porcellus ENSCPOG00000024816 N
Cmyd_10002198 Chelonia mydas Cmyd_10002198 N
helt Danio rerio ENSDARG00000056400 N
HELT Dasypus novemcinctus ENSDNOG00000011225 N
HELT Equus caballus ENSECAG00000008629 N
HELT Felis catus ENSFCAG00000025140 N
ENSFALG00000011825 Ficedula albicollis ENSFALG00000011825 N
ENSGMOG00000012454 Gadus morhua ENSGMOG00000012454 N
helt Gasterosteus aculeatus ENSGACG00000017707 N
HELT Homo sapiens ENSG00000187821 N
ENSSTOG00000009054 Ictidomys tridecemlineatus ENSSTOG00000009054 N
ENSLACG00000001871 Latimeria chalumnae ENSLACG00000001871 N
ENSLOCG00000013768 Lepisosteus oculatus ENSLOCG00000013768 N
HELT Loxodonta africana ENSLAFG00000017721 N
HELT Monodelphis domestica ENSMODG00000004628 N
ENSMPUG00000011138 Mustela putorius furo ENSMPUG00000011138 N
Helt Mus musculus ENSMUSG00000047171 N
Ogr17354 Ophisaurus gracilis Ogr17354 N
ENSONIG00000017593 Oreochromis niloticus ENSONIG00000017593 N
helt Oryzias latipes ENSORLG00000019546 N
ENSOARG00000007647 Ovis aries ENSOARG00000007647 N
HELT Pan troglodytes ENSPTRG00000016645 N
ENSPFOG00000002530 Poecilia formosa ENSPFOG00000002530 N
Pvit_12333 Pogona vitticeps Pvit_12333 N
Helt Rattus norvegicus ENSRNOG00000010785 N
ENSSHAG00000004636 Sarcophilus harrisii ENSSHAG00000004636 N
HELT Taeniopygia guttata ENSTGUG00000006754 N
helt Takifugu rubripes ENSTRUG00000017593 N
helt Tetraodon nigroviridis ENSTNIG00000018055 N
XP_002934312 Xenopus tropicalis XP_002934312 N
ENSXMAG00000005631 Xiphophorus maculatus ENSXMAG00000005631 N