VDBG_08450 (Verticillium alfalfae)
Zinc cluster

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00172 (Zn_clus) IPR001138 VDBG_08450 T387559_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
NCU10258
M02631_2.00 		Neurospora crassa
NNHCGGVN
NBCCGDNN		 PBM
Weirauch et al.(2014)
pTH8978 		0.636 1.000
For this family, TFs with SR scores > 0.537 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
EEY22340 Zinc cluster 15 53

Links

Other Zinc cluster family TFs
Other Verticillium alfalfae TFs

43 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
F775_18168 Aegilops tauschii F775_18168 N
BRADI3G08280 Brachypodium distachyon BRADI3G08280 N
LPERR02G07820 Leersia perrieri LPERR02G07820 N
OGLUM02G09240 Oryza glumaepatula OGLUM02G09240 N
BGIOSGA006856 Oryza indica BGIOSGA006856 N
OMERI02G10300 Oryza meridionalis OMERI02G10300 N
ONIVA11G03290 Oryza nivara ONIVA11G03290 N
OPUNC06G17210 Oryza punctata OPUNC06G17210 N
OPUNC02G08070 Oryza punctata OPUNC02G08070 N
ORUFI02G09060 Oryza rufipogon ORUFI02G09060 N
OS02G0221100 Oryza sativa OS02G0221100 N
Pavir.J30600 Panicum virgatum Pavir.J30600 N
Pavir.J40109 Panicum virgatum Pavir.J40109 N
Si007981m.g Setaria italica Si007981m.g N
Si019540m.g Setaria italica Si019540m.g N
Sb04g007795 Sorghum bicolor Sb04g007795 N
Traes_6AS_4D5775944 Triticum aestivum Traes_6AS_4D5775944 N
TRIUR3_19577 Triticum urartu TRIUR3_19577 N
GRMZM2G340177 Zea mays GRMZM2G340177 N
GRMZM2G170559 Zea mays GRMZM2G170559 N