ABF1 (Saccharomyces cerevisiae)
ABF1

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF04684 (BAF1_ABF1) IPR006774 YKL112W T000084_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
ABF1
M00001_2.00		 Saccharomyces cerevisiae
TTATCACT
AGTGATAA		 PBM
Badis et al.(2008)
ABF1_4505		 (Direct) (Direct)
ABF1
M00902_2.00		 Saccharomyces cerevisiae
CGTNNNNNRN
NYNNNNNACG		 PBM
Gordan et al.(2011)
Abf1		 (Direct) (Direct)
ABF1
M07432_2.00		 Saccharomyces cerevisiae
NNRTCRYNNNNNACGR
YCGTNNNNNRYGAYNN		 PBM, CSA and or DIP-chip
Mathelier et al.(2014)
MA0265.1		 (Direct) (Direct)
ABF1
M08469_2.00		 Saccharomyces cerevisiae
NNRTCRYNNNNNACGDNN
NNHCGTNNNNNRYGAYNN		 Misc
DeBoer et al.(2011)
YKL112W_791		 (Direct) (Direct)
ABF1
M09695_2.00		 Saccharomyces cerevisiae
NNWNRTCAYKHHDNACGDDNNH
DNNHHCGTNHDDARTGAYNWNN		 Transfac
Matys et al.(2006)
F$ABF1_01		 (Direct) (Direct)
ABF1
M09696_2.00		 Saccharomyces cerevisiae Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
F$ABF1_02		 (Direct) (Direct)
ABF1
M09697_2.00		 Saccharomyces cerevisiae Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
F$ABF1_Q6		 (Direct) (Direct)
ABF1
M09698_2.00		 Saccharomyces cerevisiae
NRTCAYKNNHNACGD
HCGTNDNNMRTGAYN		 Transfac
Matys et al.(2006)
F$ABF_C		 (Direct) (Direct)

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
For this family, TFs with SR scores > 0.700 will likely have a similar motif

Experimental Constructs

Motif ID Domain From To Sequence
M00902_2.00 ABF1 6 142
M00902_2.00 ABF1 258 448
M00902_2.00 ABF1 560 687
M00902_2.00 ABF1 669 731

DNA Binding Domains

Protein ID Domain From To Sequence
YKL112W ABF1 6 142
YKL112W ABF1 258 448
YKL112W ABF1 560 687
YKL112W ABF1 669 731

Links

Other ABF1 family TFs
Other Saccharomyces cerevisiae TFs

0 Related TFs

">No related TF found