BGIOSGA000982 (Oryza indica)
AP2,B3

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00847 (AP2)
PF02362 (B3) 		IPR001471
IPR003340 		BGIOSGA000982 T010406_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
RAV1
M06692_2.00 		Arabidopsis thaliana
NCAACADAWWHHWHHHKDDNN
NNHHMDDDWDDWWTHTGTTGN		 Dap-seq
OMalley et al.(2016)
RAV1_colamp_a 		0.720 0.720
RAV1
M06693_2.00 		Arabidopsis thaliana
VCAACADAWWHHAYNHB
VDNRTDDWWTHTGTTGB		 Dap-seq
OMalley et al.(2016)
RAV1_col 		0.720 0.720
RAV1
M02649_2.00 		Arabidopsis thaliana
VNSCAACAKWDN
NHWMTGTTGSNB		 SELEX
Mathelier et al.(2014)
MA0582.1 		0.720 0.720
RAV1
M02650_2.00 		Arabidopsis thaliana
NHCWCCTGRNNH
DNNYCAGGWGDN		 SELEX
Mathelier et al.(2014)
MA0583.1 		0.720 0.720
RAV1
M09748_2.00 		Arabidopsis thaliana
VNSCAACAKWDN
NHWMTGTTGSNB		 Transfac
Matys et al.(2006)
P$RAV1_01 		0.720 0.720
RAV1
M09749_2.00 		Arabidopsis thaliana
NHCWCCTGRNNH
DNNYCAGGWGDN		 Transfac
Matys et al.(2006)
P$RAV1_02 		0.720 0.720
ARF14
M01648_2.00 		Arabidopsis thaliana
RCAACAKA
TMTGTTGY		 PBM
Weirauch et al.(2014)
pTH8727 		0.712 0.712
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
BGIOSGA000982-PA AP2 59 97
BGIOSGA000982-PA B3 184 289

Links

Other AP2,B3 family TFs
Other Oryza indica TFs

88 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
OGLUM01G31260 Oryza glumaepatula OGLUM01G31260 I 0.947
GRMZM2G169654 Zea mays GRMZM2G169654 I 0.894
Sb03g031860 Sorghum bicolor Sb03g031860 I 0.886
ONIVA01G31290 Oryza nivara ONIVA01G31290 I 0.863
OBART01G27360 Oryza barthii OBART01G27360 I 0.863
ORGLA01G0225300 Oryza glaberrima ORGLA01G0225300 I 0.863
OMERI01G25110 Oryza meridionalis OMERI01G25110 I 0.863
OPUNC01G27280 Oryza punctata OPUNC01G27280 I 0.863
OS01G0693400 Oryza sativa OS01G0693400 I 0.863
ORUFI01G30390 Oryza rufipogon ORUFI01G30390 I 0.863
OMERI05G22110 Oryza meridionalis OMERI05G22110 I 0.856
OGLUM05G26380 Oryza glumaepatula OGLUM05G26380 I 0.856
Pavir.Eb02845 Panicum virgatum Pavir.Eb02845 I 0.841
OPUNC05G22370 Oryza punctata OPUNC05G22370 I 0.841
OS05G0549800 Oryza sativa OS05G0549800 I 0.833
Pavir.Ea02092 Panicum virgatum Pavir.Ea02092 I 0.833
BGIOSGA020315 Oryza indica BGIOSGA020315 I 0.833
ONIVA05G26000 Oryza nivara ONIVA05G26000 I 0.833
LPERR01G23470 Leersia perrieri LPERR01G23470 I 0.830
LPERR05G20600 Leersia perrieri LPERR05G20600 I 0.826
Si024576m.g Setaria italica Si024576m.g I 0.818
GRMZM2G159592 Zea mays GRMZM2G159592 I 0.780
BRADI2G47220 Brachypodium distachyon BRADI2G47220 I 0.776
BRADI2G17610 Brachypodium distachyon BRADI2G17610 I 0.758
MDP0000128924 Malus domestica MDP0000128924 I 0.758
Pm029015 Prunus mume Pm029015 I 0.750
PGSC0003DMG400000811 Solanum tuberosum PGSC0003DMG400000811 I 0.750
gene03871-v1.0-hybrid Fragaria vesca gene03871-v1.0-hybrid I 0.750
Si004045m.g Setaria italica Si004045m.g I 0.750
PRUPE_ppa006243mg Prunus persica PRUPE_ppa006243mg I 0.750
Ca_24123 Cicer arietinum Ca_24123 I 0.742
Solyc05g009790.1 Solanum lycopersicum Solyc05g009790.1 I 0.742
Pavir.J13012 Panicum virgatum Pavir.J13012 I 0.740
GSMUA_Achr4G06710_001 Musa acuminata GSMUA_Achr4G06710_001 I 0.735
GLYMA20G32730 Glycine max GLYMA20G32730 I 0.735
Pavir.Ca01826 Panicum virgatum Pavir.Ca01826 I 0.733
TCM_011862 Theobroma cacao TCM_011862 I 0.727
GLYMA01G22260 Glycine max GLYMA01G22260 I 0.727
Lus10041487.g Linum usitatissimum Lus10041487.g I 0.727
RAV1 Arabidopsis lyrata scaffold_101479.1 I 0.727
POPTR_0008s11600 Populus trichocarpa POPTR_0008s11600 I 0.727
Gorai.008G185900 Gossypium raimondii Gorai.008G185900 I 0.727
mgf019592m Mimulus guttatus mgf019592m I 0.727
GLYMA02G11060 Glycine max GLYMA02G11060 I 0.727
Aquca_026_00225 Aquilegia coerulea Aquca_026_00225 I 0.720
SapurV1A.1001s0020 Salix purpurea SapurV1A.1001s0020 I 0.720
SapurV1A.3302s0010 Salix purpurea SapurV1A.3302s0010 I 0.720
Carubv10020536m.g Capsella rubella Carubv10020536m.g I 0.720
Cagra.1157s0007 Capsella grandiflora Cagra.1157s0007 I 0.720
TRIUR3_27886 Triticum urartu TRIUR3_27886 I 0.720
cassava12324.valid.m1 Manihot esculenta cassava12324.valid.m1 I 0.720
TRAES3BF062600010CFD_g Triticum aestivum TRAES3BF062600010CFD_g I 0.720
OS01G0140700 Oryza sativa OS01G0140700 I 0.720
OGLUM01G02850 Oryza glumaepatula OGLUM01G02850 I 0.720
OMERI01G02480 Oryza meridionalis OMERI01G02480 I 0.720
ONIVA01G02970 Oryza nivara ONIVA01G02970 I 0.720
OB01G12600 Oryza brachyantha OB01G12600 I 0.720
BRADI2G02720 Brachypodium distachyon BRADI2G02720 I 0.720
BGIOSGA002747 Oryza indica BGIOSGA002747 I 0.720
Bra026917 Brassica rapa Bra026917 I 0.720
BRADI2G02710 Brachypodium distachyon BRADI2G02710 I 0.720
ORGLA01G0022400 Oryza glaberrima ORGLA01G0022400 I 0.720
OBART01G02610 Oryza barthii OBART01G02610 I 0.720
ORUFI01G02660 Oryza rufipogon ORUFI01G02660 I 0.720
GRMZM2G059939 Zea mays GRMZM2G059939 I 0.718
MLOC_63261 Hordeum vulgare MLOC_63261 I 0.712
Gorai.005G138100 Gossypium raimondii Gorai.005G138100 I 0.712
TRAES3BF108500010CFD_g Triticum aestivum TRAES3BF108500010CFD_g I 0.712
Gorai.013G080000 Gossypium raimondii Gorai.013G080000 I 0.712
ARF14 Arabidopsis thaliana AT3G25730 D 0.712
Traes_3B_DF7E924991 Triticum aestivum Traes_3B_DF7E924991 I 0.712
Carubv10019207m.g Capsella rubella Carubv10019207m.g I 0.712
TRAES3BF098200010CFD_g Triticum aestivum TRAES3BF098200010CFD_g I 0.712
Aquca_002_01106 Aquilegia coerulea Aquca_002_01106 I 0.712
Traes_3B_DF7E92499 Triticum aestivum Traes_3B_DF7E92499 I 0.712
Sb09g027530 Sorghum bicolor Sb09g027530 I 0.711
Pavir.J23476 Panicum virgatum Pavir.J23476 I 0.705
Thhalv10019566m.g Eutrema salsugineum Thhalv10019566m.g I 0.705
Thhalv10007983m.g Eutrema salsugineum Thhalv10007983m.g I 0.705
BGIOSGA002753 Oryza indica BGIOSGA002753 I 0.705
BGIOSGA002748 Oryza indica BGIOSGA002748 I 0.705
LPERR01G02380 Leersia perrieri LPERR01G02380 I 0.705
OMERI01G02500 Oryza meridionalis OMERI01G02500 I 0.705
ONIVA01G02990 Oryza nivara ONIVA01G02990 I 0.705
Si001909m.g Setaria italica Si001909m.g I 0.705
ORUFI01G02680 Oryza rufipogon ORUFI01G02680 I 0.705
OS01G0141000 Oryza sativa OS01G0141000 I 0.705
Bo3g138550 Brassica oleracea Bo3g138550 I 0.705