CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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Lus10005636.g
(
Linum usitatissimum
)
ARID/BRIGHT,Sox
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF01388 (ARID)
PF00505 (HMG_box)
IPR001606
IPR000910
Lus10005636.g
T017151_2.00
JGI:Phytozome (2018-Apr-12)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No TFs with similar DNA binding domains
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Lus10005636
ARID/BRIGHT
38
125
DAKLFWDTLQKFHSQIGTKFMVPPPPPASPLKWRNSSIKFCGLVCFLYQVVAEKKWREVGIVFQFSPTTTSASFVLRKHYLNILYHYE
Lus10005636
Sox
233
300
PKPTRSGYNFFFAEKHYKLKSLYPNREREFTKIIGHSWSNLTQEERTVYQNIGMQDKERYRRELKEYK
Links
Other
ARID/BRIGHT,Sox
family TFs
Other
Linum usitatissimum
TFs
9 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Lus10021228.g
Linum usitatissimum
Lus10021228.g
I
0.838
cassava21037.m1
Manihot esculenta
cassava21037.m1
I
0.730
orange1.1g020305m.g
Citrus sinensis
orange1.1g020305m.g
I
0.709
Ciclev10001816m.g
Citrus clementina
Ciclev10001816m.g
I
0.709
SapurV1A.0573s0150
Salix purpurea
SapurV1A.0573s0150
I
0.703
Cucsa.271870
Cucumis sativus
Cucsa.271870
I
0.703
Cagra.0799s0081
Capsella grandiflora
Cagra.0799s0081
I
0.703
evm.TU.supercontig_26.248
Carica papaya
evm.TU.supercontig_26.248
I
0.703
Carubv10020597m.g
Capsella rubella
Carubv10020597m.g
I
0.703