CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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MDP0000167232
(
Malus domestica
)
ARID/BRIGHT,Sox
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF01388 (ARID)
PF00505 (HMG_box)
IPR001606
IPR000910
MDP0000167232
T017156_2.00
JGI:Phytozome (2018-Apr-12)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No TFs with similar DNA binding domains
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
MDP0000167232
ARID/BRIGHT
61
146
SSDLFWEKLKEFHDSFRTKFMIPTVGGKTLDLHLLFVEVTSRDGLEKVIRDRKWKEVITAFNFPTTITSASFVLRKYYLSLLYHFE
MDP0000167232
Sox
258
325
PKSNRSGYNFFFAEHYARLKPLYYGQERAISKKIGYLWNNLTEAEKQVYQDKAXKDKERYRTELLEYK
Links
Other
ARID/BRIGHT,Sox
family TFs
Other
Malus domestica
TFs
15 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
MDP0000257366
Malus domestica
MDP0000257366
I
0.882
Pm000293
Prunus mume
Pm000293
N
0.855
PRUPE_ppa008470mg
Prunus persica
PRUPE_ppa008470mg
N
0.855
gene01438-v1.0-hybrid
Fragaria vesca
gene01438-v1.0-hybrid
N
0.809
POPTR_0011s17180
Populus trichocarpa
POPTR_0011s17180
N
0.783
28657.m000391
Ricinus communis
28657.m000391
N
0.783
Ciclev10008919m.g
Citrus clementina
Ciclev10008919m.g
N
0.763
orange1.1g020460m.g
Citrus sinensis
orange1.1g020460m.g
N
0.763
PK06884.1
Cannabis sativa
PK06884.1
N
0.757
cassava30583.valid.m1
Manihot esculenta
cassava30583.valid.m1
N
0.757
TCM_030511
Theobroma cacao
TCM_030511
I
0.743
VIT_19s0015g01770
Vitis vinifera
VIT_19s0015g01770
N
0.743
SapurV1A.0338s0260
Salix purpurea
SapurV1A.0338s0260
I
0.737
Gorai.013G147900
Gossypium raimondii
Gorai.013G147900
N
0.737
evm.TU.supercontig_12.68
Carica papaya
evm.TU.supercontig_12.68
I
0.704