CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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Pm004568
(
Prunus mume
)
AT hook,MBD
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF02178 (AT_hook)
PF01429 (MBD)
IPR017956
IPR001739
Pm004568
T018304_2.00
GigaDB (2015-Oct-22)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No TFs with similar DNA binding domains
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Pm004568
AT hook
169
181
KRKRGRPRKDANA
Pm004568
AT hook
214
225
KRKRGRPRKDEN
Pm004568
MBD
315
375
IVQASELLDALPRQWKVMLSLKRNGGHVCLFCRRYISPNGQQFVSCKEVSSYLLSYFGVGN
Links
Other
AT hook,MBD
family TFs
Other
Prunus mume
TFs
2 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
gene28662-v1.0-hybrid
Fragaria vesca
gene28662-v1.0-hybrid
N
0.791
MDP0000709648
Malus domestica
MDP0000709648
N
0.725