CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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nRc.2.0.1.g22459
(
Romanomermis culicivorax
)
C2H2 ZF,Homeodomain
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00096 (zf-C2H2)
PF00046 (Homeobox)
IPR007087
IPR001356
nRc.2.0.1.g22459
T076396_2.00
WormBase:ParaSite (2015-Oct-22)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No TFs with similar DNA binding domains
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
nRc.2.0.1.t22459-RA
C2H2 ZF
82
104
FKCFECGKAFKFKHHLKEHLRIH
nRc.2.0.1.t22459-RA
C2H2 ZF
117
138
FQCSHCGKRFSHSGSYSSHKSS
nRc.2.0.1.t22459-RA
Homeodomain
333
389
LRSRSFLSDEQVAILHDHFRSNPFPNKYELSMLADRVNVGKRVVQVWFQNKRAQERR
nRc.2.0.1.t22459-RA
C2H2 ZF
648
670
FSCDQCDKVFGKQSSLARHKYEH
nRc.2.0.1.t22459-RA
C2H2 ZF
676
698
YKCNNCEKAFKHKHHLTEHLRLH
nRc.2.0.1.t22459-RA
C2H2 ZF
733
754
YICDKCLKRFSHSGSYSQHMNH
Links
Other
C2H2 ZF,Homeodomain
family TFs
Other
Romanomermis culicivorax
TFs
32 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
CRE10982
Caenorhabditis remanei
CRE10982
N
0.829
nDi.2.2.2.g01416
Dirofilaria immitis
nDi.2.2.2.g01416
N
0.829
LOAG_17507
Loa loa
LOAG_17507
N
0.829
CJA12606
Caenorhabditis japonica
CJA12606
N
0.829
CBN31083
Caenorhabditis brenneri
CBN31083
N
0.829
CBG10736
Caenorhabditis briggsae
CBG10736
N
0.829
CBN24068
Caenorhabditis brenneri
CBN24068
N
0.829
Bm3681
Brugia malayi
Bm3681
N
0.829
EVEC_0000655901
Enterobius vermicularis
EVEC_0000655901
N
0.824
zag-1
Caenorhabditis elegans
WBGene00006970
N
0.824
DICVIV_05785
Dictyocaulus viviparus
DICVIV_05785
N
0.823
HPLM_0000501901
Haemonchus placei
HPLM_0000501901
N
0.818
SMUV_0000904801
Syphacia muris
SMUV_0000904801
N
0.818
ASU_02713
Ascaris suum
ASU_02713
N
0.812
SVE_1904900
Strongyloides venezuelensis
SVE_1904900
N
0.812
SPAL_0000385600
Strongyloides papillosus
SPAL_0000385600
N
0.812
SSTP_0000865200
Strongyloides stercoralis
SSTP_0000865200
N
0.806
PTRK_0001785400
Parastrongyloides trichosuri
PTRK_0001785400
N
0.806
L892_g21703
Steinernema scapterisci
L892_g21703
N
0.800
L596_g23719
Steinernema carpocapsae
L596_g23719
N
0.800
L898_g6841
Steinernema monticolum
L898_g6841
N
0.794
L893_g27223
Steinernema glaseri
L893_g27223
N
0.794
L889_g29456
Steinernema feltiae
L889_g29456
N
0.794
TTRE_0000009201
Trichuris trichiura
TTRE_0000009201
N
0.775
TMUE_s0010015900
Trichuris muris
TMUE_s0010015900
N
0.775
D918_03480
Trichuris suis
D918_03480
N
0.775
EFV59106
Trichinella spiralis
EFV59106
N
0.759
SBAD_0000454101
Soboliphyme baturini
SBAD_0000454101
N
0.745
D917_10103
Trichinella nativa
D917_10103
N
0.738
YQE_00812
Dendroctonus ponderosae
YQE_00812
N
0.706
nAv.1.0.1.g02082
Acanthocheilonema viteae
nAv.1.0.1.g02082
N
0.706
YQE_04155
Dendroctonus ponderosae
YQE_04155
N
0.706