CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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PRDM9
(
Homo sapiens
)
C2H2 ZF
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF00096 (zf-C2H2)
IPR007087
ENSG00000164256
T095025_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
PRDM9
M07610_2.00
Homo sapiens
BYYBYTNNNNCCHCCSYNVCCNCB
VGNGGBNRSGGDGGNNNNARVRRV
ChIP-seq+ChIP-exo
Barazandeh et al.(2018)
PRDM9.RCADE.ReprocessedData
(Direct)
(Direct)
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
For this family, TFs with SR scores >
0.755
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSP00000296682
C2H2 ZF
527
546
GECGQGFSVKSDVITHQRTH
ENSP00000296682
C2H2 ZF
552
574
YVCRECGRGFSWKSHLLIHQRIH
ENSP00000296682
C2H2 ZF
580
602
YVCRECGRGFSWQSVLLTHQRTH
ENSP00000296682
C2H2 ZF
608
630
YVCRECGRGFSRQSVLLTHQRRH
ENSP00000296682
C2H2 ZF
636
658
YVCRECGRGFSRQSVLLTHQRRH
ENSP00000296682
C2H2 ZF
664
686
YVCRECGRGFSWQSVLLTHQRTH
ENSP00000296682
C2H2 ZF
692
714
YVCRECGRGFSWQSVLLTHQRTH
ENSP00000296682
C2H2 ZF
720
742
YVCRECGRGFSNKSHLLRHQRTH
ENSP00000296682
C2H2 ZF
748
770
YVCRECGRGFRDKSHLLRHQRTH
ENSP00000296682
C2H2 ZF
776
798
YVCRECGRGFRDKSNLLSHQRTH
ENSP00000296682
C2H2 ZF
804
826
YVCRECGRGFSNKSHLLRHQRTH
ENSP00000296682
C2H2 ZF
832
854
YVCRECGRGFRNKSHLLRHQRTH
ENSP00000296682
C2H2 ZF
860
882
YVCRECGRGFSDRSSLCYHQRTH
Links
Other
C2H2 ZF
family TFs
Other
Homo sapiens
TFs
0 Related TFs
">No related TF found