CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
Home
Tools
View cart
Bulk downloads
Database stats
Contact us
Help
Update Log
FAQ
Links
How to cite
augustus_masked-nMf.1.1.scaf10644-processed-gene-0.0
(
Meloidogyne floridensis
)
C2H2 ZF
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00096 (zf-C2H2)
IPR007087
augustus_masked-nMf.1.1.scaf10644-processed-gene-0.0
T152353_2.00
WormBase:ParaSite (2015-Oct-22)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No TFs with similar DNA binding domains
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
augustus_masked-nMf.1.1.scaf10644-processed-gene-0.0-mRNA-1
C2H2 ZF
1
21
CNQCGALFSVKRELATHLRVH
augustus_masked-nMf.1.1.scaf10644-processed-gene-0.0-mRNA-1
C2H2 ZF
27
49
HQCEKCGKEFGTRQLLKKHTMWH
augustus_masked-nMf.1.1.scaf10644-processed-gene-0.0-mRNA-1
C2H2 ZF
55
78
HVCPKKCGKEFGTRQLLKKHTMWH
augustus_masked-nMf.1.1.scaf10644-processed-gene-0.0-mRNA-1
C2H2 ZF
84
106
HVCPSCGKAFFQKGHLTQHLMIH
augustus_masked-nMf.1.1.scaf10644-processed-gene-0.0-mRNA-1
C2H2 ZF
130
151
FVCGRCSKCFQQEVELEGHVLN
Links
Other
C2H2 ZF
family TFs
Other
Meloidogyne floridensis
TFs
0 Related TFs
">No related TF found