CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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Alligator_sinensis_CCG000926.1
(
Alligator sinensis
)
Homeodomain,Paired box
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00046 (Homeobox)
PF00292 (PAX)
IPR001356
IPR001523
Alligator_sinensis_CCG000926.1
T237691_2.00
GigaDB (2015-Oct-22)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
PAX4
M00350_2.00
Homo sapiens
NNNATTAN
NTAATNNN
PBM
Barrera et al.(2016)
PAX4_REF
0.732
0.732
PAX4
M00351_2.00
Homo sapiens
NNNATTAN
NTAATNNN
PBM
Barrera et al.(2016)
PAX4_REF_R3
0.732
0.732
PAX4
M03295_2.00
Homo sapiens
HKAATTAR
YTAATTMD
SELEX
Jolma et al.(2013)
PAX4_1
0.732
0.732
PAX4
M03296_2.00
Homo sapiens
YKAATTAV
BTAATTMR
SELEX
Jolma et al.(2013)
PAX4_2
0.732
0.732
PAX4
M03883_2.00
Homo sapiens
SGTCACGCWTSRNTG
CANYSAWGCGTGACS
SELEX
Nitta et al.(2015)
PAX4_1
0.732
0.732
PAX4
M03884_2.00
Homo sapiens
NNAATTANYKAATDMV
BKHATTMRNTAATTNN
SELEX
Nitta et al.(2015)
PAX4_2
0.732
0.732
PAX4
M05430_2.00
Homo sapiens
NAATTANNNNNNVNTAATTN
NAATTANBNNNNNNTAATTN
SELEX
Yin et al.(2017)
PAX4_eDBD_HT-SELEX_1
0.732
0.732
PAX4
M05431_2.00
Homo sapiens
NRYTWYACGCWTSRNYRNNYV
BRNNYRNYSAWGCGTRWARYN
SELEX
Yin et al.(2017)
PAX4_eDBD_HT-SELEX_2
0.732
0.732
PAX4
M05432_2.00
Homo sapiens
NTYACGCWYSRNYKMVYN
NRBKMRNYSRWGCGTRAN
SELEX
Yin et al.(2017)
PAX4_eDBD_HT-SELEX_3
0.732
0.732
PAX4
M05433_2.00
Homo sapiens
WHACGSTMATTDR
YHAATKASCGTDW
SELEX
Yin et al.(2017)
PAX4_eDBD_HT-SELEX_4
0.732
0.732
PAX4
M10811_2.00
Homo sapiens
NVNBSNNYVCGCHTSAMBNCN
NGNVKTSADGCGBRNNSVNBN
Transfac
Matys et al.(2006)
V$PAX4_01
0.732
0.732
PAX4
M10812_2.00
Homo sapiens
NAHWAATTDVV
BBHAATTWDTN
Transfac
Matys et al.(2006)
V$PAX4_02
0.732
0.732
PAX4
M10813_2.00
Homo sapiens
NDNNHYCACCCB
VGGGTGRDNNHN
Transfac
Matys et al.(2006)
V$PAX4_03
0.732
0.732
PAX4
M10814_2.00
Homo sapiens
RRAAAWWRNNHHNVHHNVHVNNHHSAYHSB
VSDRTSDDNNBDBNDDBNDDNNYWWTTTYY
Transfac
Matys et al.(2006)
V$PAX4_04
0.732
0.732
PAX4
M10815_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$PAX4_Q2
0.732
0.732
PAX4
M05434_2.00
Homo sapiens
NHATTANBTAATDN
NHATTAVNTAATDN
SELEX
Yin et al.(2017)
PAX4_eDBD_Methyl-HT-SELEX_1
0.732
0.732
PAX4
M05435_2.00
Homo sapiens
VATTWYACGCWTSRNYDVNYN
NRNBHRNYSAWGCGTRWAATB
SELEX
Yin et al.(2017)
PAX4_eDBD_Methyl-HT-SELEX_2
0.732
0.732
PAX4
M05436_2.00
Homo sapiens
HTYACGCWTSANYGMNYN
NRNKCRNTSAWGCGTRAD
SELEX
Yin et al.(2017)
PAX4_eDBD_Methyl-HT-SELEX_3
0.732
0.732
PAX4
M05437_2.00
Homo sapiens
DHRYGCTAATTAN
NTAATTAGCRYDH
SELEX
Yin et al.(2017)
PAX4_eDBD_Methyl-HT-SELEX_4
0.732
0.732
PAX4
M00347_2.00
Homo sapiens
NNNATND
HNATNNN
PBM
Barrera et al.(2016)
PAX4_R183C
0.724
0.724
PAX4
M00348_2.00
Homo sapiens
NNDATTAN
NTAATHNN
PBM
Barrera et al.(2016)
PAX4_R192H
0.724
0.724
PAX4
M00349_2.00
Homo sapiens
NNNATTANN
NNTAATNNN
PBM
Barrera et al.(2016)
PAX4_R192S
0.724
0.724
Pax4
M00542_2.00
Mus musculus
NNNATTAN
NTAATNNN
PBM
Berger et al.(2008)
Pax4_3989
0.717
0.717
For this family, TFs with SR scores >
0.700
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Alligator_sinensis_CCG000926.1
Paired box
6
93
PSILVPQVSNGCVSKILDRYYRTGAVEPKATGGSKARLAPPAVVARIAQLKQEQPGLFAWEIQRRLQSEGVCASHRTPSVSSINRVLR
Alligator_sinensis_CCG000926.1
Homeodomain
114
154
PAFQRGQYPDACTRESLAMATQLPDPTIRVWFSNRRAKWRR
Links
Other
Homeodomain,Paired box
family TFs
Other
Alligator sinensis
TFs
32 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Cmyd_10003254
Chelonia mydas
Cmyd_10003254
N
0.772
Afo_R008534
Aptenodytes forsteri
Afo_R008534
I
0.772
PAX4
Sorex araneus
ENSSARG00000004842
I
0.740
PAX4
Equus caballus
ENSECAG00000008343
I
0.732
ENSPPYG00000017971
Pongo abelii
ENSPPYG00000017971
I
0.732
PAX4
Pan troglodytes
ENSPTRG00000019653
I
0.732
PAX4
Cavia porcellus
ENSCPOG00000006244
I
0.732
PAX4
Homo sapiens
ENSG00000106331
D
0.732
ENSAMEG00000004648
Ailuropoda melanoleuca
ENSAMEG00000004648
I
0.724
PAX4
Otolemur garnettii
ENSOGAG00000013348
I
0.724
PAX4
Macaca mulatta
ENSMMUG00000015429
I
0.724
PAX4
Oryctolagus cuniculus
ENSOCUG00000001612
I
0.724
PAX4
Microcebus murinus
ENSMICG00000000095
I
0.724
ENSCSAG00000010195
Chlorocebus sabaeus
ENSCSAG00000010195
I
0.724
PAX4
Callithrix jacchus
ENSCJAG00000017652
I
0.724
PAX4
Canis familiaris
ENSCAFG00000001719
I
0.724
ENSP00000368014
Macaca fascicularis
ENSP00000368014
I
0.724
Myotis_brandtii_Pax4_10010526
Myotis brandtii
Myotis_brandtii_Pax4_10010526
I
0.724
PAX4
Sus scrofa
ENSSSCG00000016591
I
0.724
PAX4
Gorilla gorilla
ENSGGOG00000002555
I
0.724
PAX4
Felis catus
ENSFCAG00000005485
I
0.724
ENSSTOG00000002127
Ictidomys tridecemlineatus
ENSSTOG00000002127
I
0.717
PAX4
Tursiops truncatus
ENSTTRG00000006056
I
0.717
ENSBTAP00000042667-D1
Bos grunniens
ENSBTAP00000042667-D1
I
0.717
ENSNLEG00000012257
Nomascus leucogenys
ENSNLEG00000012257
I
0.717
PAX4
Erinaceus europaeus
ENSEEUG00000009616
I
0.717
ENSMPUG00000006575
Mustela putorius furo
ENSMPUG00000006575
I
0.717
Pax4
Mus musculus
ENSMUSG00000029706
D
0.717
ENSOARG00000001951
Ovis aries
ENSOARG00000001951
I
0.717
Pax4
Dipodomys ordii
ENSDORG00000000332
I
0.709
PAX4
Pteropus vampyrus
ENSPVAG00000013944
I
0.709
ENSSHAG00000015143
Sarcophilus harrisii
ENSSHAG00000015143
I
0.709