CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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EMB1789
(
Arabidopsis thaliana
)
Unknown
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
Unknown
Unknown
AT5G56930
T350215_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
EMB1789
M07358_2.00
Arabidopsis thaliana
WHHHNTTTTTACYDY
RHRGTAAAAANDDDW
Dap-seq
OMalley et al.(2016)
EMB1789_col_a
(Direct)
(Direct)
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
For this family, TFs with SR scores >
0.700
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
AT5G56930.1
Unknown
1
675
MESSVAPFPHRRTHLPNRNYRSLLYHFCSSFDREPQISLATPAVLQELVLRTEIAQESPGETCEPPENLSITESKLNGVSGDSSGEKVETISQEKSLMLGDICDGIDLQDASVVSRHTDFFDSFELMINETQDSVPESCVNLFEALDVNDYDIVQNVLEKPNIATQVQVDPVESEKKAEEVPKSVESNEVISSGVLEACNGTVQREMELEKPVDNSPVLVDSVSRIVGGDDVEEGEISGDDNDDMLVEDDETVERHEEYQVSQDGTGNSHLTSHKSFGVEVMNVDNQAKKIDQTFSNEAKMDPGTSIKKRSAPSKDAKARKRAKARIKRAQERIALGVKKLKLKPVAPKPKPIKYCRHYLKGRCHEGDKCKFSHDTIPETKCSPCCYFATQSCMKGDDCPFDHDLSKYPCNNFITKGFCYRGDSCLFSHKGTPQSASDTPSANVTVSSTKITAASFSPQKTKKQSVRDAIAKLPAIQARVSSSVAFLKPSSHSNQRNSSDASSSKINEHVTPPQVPPLRKPSVAPKGMSFLSLDKTSQEDTVKASSASKPNTDNSDSQTLKQSQQGSFLPLGPPKGISFLSFASEEQKTLNREPQKPASSKNLKTTPSSHIQSSLLSAMKLAAEFESAKVERGNNDPTEAVNKSNVTVDTAVTRNSGNISSKILEFLSSFSHGKN
Links
Other
Unknown
family TFs
Other
Arabidopsis thaliana
TFs
0 Related TFs
">No related TF found