CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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T265_11894
(
Opisthorchis viverrini
)
Homeodomain
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00046 (Homeobox)
IPR001356
T265_11894
T236680_2.00
WormBase:ParaSite (2015-Oct-22)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
CG4328
M06538_2.00
Drosophila melanogaster
WTWATTR
YAATWAW
B1H
Mathelier et al.(2014)
MA0182.1
0.679
0.474
CG4328
M06352_2.00
Drosophila melanogaster
NWWWATTR
YAATWWWN
B1H
Zhu et al.(2011)
CG4328_Cell_FBgn0036274
0.679
0.474
CG4328
M06353_2.00
Drosophila melanogaster
YAATWANN
NNTWATTR
B1H
Zhu et al.(2011)
CG4328_SOLEXA_FBgn0036274
0.679
0.474
SNAPOd2T00003340001
M02228_2.00
Oikopleura dioica
NNNTAATWWN
NWWATTANNN
PBM
Weirauch et al.(2014)
pTH6369
0.669
0.526
Lmx1a
M00432_2.00
Mus musculus
NNDATKRN
NYMATHNN
PBM
Berger et al.(2008)
Lmx1a_2238
0.665
0.491
Lmx1b
M00482_2.00
Mus musculus
NDADDRN
NYHHTHN
PBM
Berger et al.(2008)
Lmx1b_3433
0.665
0.491
LMX1A
M03179_2.00
Homo sapiens
NTAATTAV
BTAATTAN
SELEX
Jolma et al.(2013)
LMX1A_1
0.665
0.491
LMX1B
M03153_2.00
Homo sapiens
NTWATTRN
NYAATWAN
SELEX
Jolma et al.(2013)
LMX1B_1
0.665
0.491
LMX1B
M03154_2.00
Homo sapiens
DTAATTRV
BYAATTAH
SELEX
Jolma et al.(2013)
LMX1B_2
0.665
0.491
LMX1A
M05215_2.00
Homo sapiens
YTAATTAV
BTAATTAR
SELEX
Yin et al.(2017)
LMX1A_eDBD_HT-SELEX
0.665
0.491
LMX1B
M05153_2.00
Homo sapiens
NNNBTAATTAN
NTAATTAVNNN
SELEX
Yin et al.(2017)
LMX1B_eDBD_HT-SELEX
0.665
0.491
LMX1B
M05156_2.00
Homo sapiens
NDDTTAATTAH
DTAATTAAHHN
SELEX
Yin et al.(2017)
LMX1B_FL_HT-SELEX
0.665
0.491
LMX1A
M05216_2.00
Homo sapiens
DTAAYGHN
NDCRTTAH
SELEX
Yin et al.(2017)
LMX1A_eDBD_Methyl-HT-SELEX_1
0.665
0.491
LMX1A
M05217_2.00
Homo sapiens
YTAATTRN
NYAATTAR
SELEX
Yin et al.(2017)
LMX1A_eDBD_Methyl-HT-SELEX_2
0.665
0.491
LMX1B
M05154_2.00
Homo sapiens
NNNBYAATTRN
NYAATTRVNNN
SELEX
Yin et al.(2017)
LMX1B_eDBD_Methyl-HT-SELEX_1
0.665
0.491
LMX1B
M05155_2.00
Homo sapiens
WTAAYGAR
YTCRTTAW
SELEX
Yin et al.(2017)
LMX1B_eDBD_Methyl-HT-SELEX_2
0.665
0.491
LMX1B
M05157_2.00
Homo sapiens
TTAACGAG
CTCGTTAA
SELEX
Yin et al.(2017)
LMX1B_FL_Methyl-HT-SELEX_1
0.665
0.491
LMX1B
M05158_2.00
Homo sapiens
NWWTTAATTAW
WTAATTAAWWN
SELEX
Yin et al.(2017)
LMX1B_FL_Methyl-HT-SELEX_2
0.665
0.491
ZFHX2
M02089_2.00
Homo sapiens
NNTRATYANN
NNTRATYANN
PBM
Weirauch et al.(2014)
pTH5642
0.660
0.404
C4B866_NEMVE
M02052_2.00
Nematostella vectensis
NNTTAATTARNN
NNYTAATTAANN
PBM
Weirauch et al.(2014)
pTH6176
0.659
0.474
Lhx8
M00534_2.00
Mus musculus
NNTRATKRN
NYMATYANN
PBM
Berger et al.(2008)
Lhx8_2247
0.659
0.456
Lhx8
M03288_2.00
Mus musculus
BYRATYRVNNBTRATYRN
NYRATYAVNNBYRATYRV
SELEX
Jolma et al.(2013)
Lhx8_1
0.659
0.456
Lhx8
M03289_2.00
Mus musculus
BYRATYRV
BYRATYRV
SELEX
Jolma et al.(2013)
Lhx8_2
0.659
0.456
Lhx8
M03290_2.00
Mus musculus
TRATTGCAATYA
TRATTGCAATYA
SELEX
Jolma et al.(2013)
Lhx8_3
0.659
0.456
LHX8
M05210_2.00
Homo sapiens
STAATTAN
NTAATTAS
SELEX
Yin et al.(2017)
LHX8_FL_HT-SELEX_1
0.659
0.456
LHX8
M05211_2.00
Homo sapiens
TRATTGCAATYA
TRATTGCAATYA
SELEX
Yin et al.(2017)
LHX8_FL_HT-SELEX_2
0.659
0.456
LHX8
M10713_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$LHX8_06
0.659
0.456
LHX8
M05212_2.00
Homo sapiens
STAATYAN
NTRATTAS
SELEX
Yin et al.(2017)
LHX8_FL_Methyl-HT-SELEX_1
0.659
0.456
LHX8
M05213_2.00
Homo sapiens
NTAACGAB
VTCGTTAN
SELEX
Yin et al.(2017)
LHX8_FL_Methyl-HT-SELEX_2
0.659
0.456
LHX8
M05214_2.00
Homo sapiens
TRATTGCAATYA
TRATTGCAATYA
SELEX
Yin et al.(2017)
LHX8_FL_Methyl-HT-SELEX_3
0.659
0.456
LHX6
M02086_2.00
Homo sapiens
NTRATTRN
NYAATYAN
PBM
Weirauch et al.(2014)
pTH6556
0.659
0.439
Lhx6
M00434_2.00
Mus musculus
NTRATTRN
NYAATYAN
PBM
Berger et al.(2008)
Lhx6_2272
0.659
0.439
Lhx6_CONSTRUCT
M00539_2.00
PBM CONSTRUCTS
NNTRATTRN
NYAATYANN
PBM
Berger et al.(2008)
Lhx6_3432
0.659
0.439
LHX6
M03108_2.00
Homo sapiens
VYTAATTAVB
VBTAATTARB
SELEX
Jolma et al.(2013)
LHX6_1
0.659
0.439
LHX6
M03109_2.00
Homo sapiens
YAATYARYRCTAATTA
TAATTAGYRYTRATTR
SELEX
Jolma et al.(2013)
LHX6_2
0.659
0.439
LHX6
M03110_2.00
Homo sapiens
TRATTGCAATYA
TRATTGCAATYA
SELEX
Jolma et al.(2013)
LHX6_3
0.659
0.439
LHX6
M04992_2.00
Homo sapiens
CTAATTRV
BYAATTAG
SELEX
Yin et al.(2017)
LHX6_FL_HT-SELEX_1
0.659
0.439
LHX6
M04993_2.00
Homo sapiens
TRATTGCAATYA
TRATTGCAATYA
SELEX
Yin et al.(2017)
LHX6_FL_HT-SELEX_2
0.659
0.439
LHX6
M05870_2.00
Homo sapiens
NYTRATTR
YAATYARN
SMiLE-seq
Isakova et al.(2017)
LHX6
0.659
0.439
Lhx6
M09187_2.00
Mus musculus
NYTGATTRV
BYAATCARN
Misc
Kulakovskiy et al.(2013)
LHX6_MOUSE.H11MO.0.C
0.659
0.439
LHX6
M04994_2.00
Homo sapiens
STAATTAV
BTAATTAS
SELEX
Yin et al.(2017)
LHX6_FL_Methyl-HT-SELEX_1
0.659
0.439
LHX6
M04995_2.00
Homo sapiens
HTAACGAG
CTCGTTAD
SELEX
Yin et al.(2017)
LHX6_FL_Methyl-HT-SELEX_2
0.659
0.439
LHX6
M04996_2.00
Homo sapiens
TRATTGCAATYA
TRATTGCAATYA
SELEX
Yin et al.(2017)
LHX6_FL_Methyl-HT-SELEX_3
0.659
0.439
CG32105
M03873_2.00
Drosophila melanogaster
KTAATTAR
YTAATTAM
SELEX
Nitta et al.(2015)
CG32105_1
0.657
0.474
CG32105
M06546_2.00
Drosophila melanogaster
YTAATTA
TAATTAR
B1H
Mathelier et al.(2014)
MA0178.1
0.657
0.474
CG32105
M06368_2.00
Drosophila melanogaster
WYTAATTAV
BTAATTARW
B1H
Zhu et al.(2011)
CG32105_Cell_FBgn0052105
0.657
0.474
CG32105
M06369_2.00
Drosophila melanogaster
NNTWATTR
YAATWANN
B1H
Zhu et al.(2011)
CG32105_SOLEXA_FBgn0052105
0.657
0.474
ESX1
M00291_2.00
Homo sapiens
NNTRATNRN
NYNATYANN
PBM
Barrera et al.(2016)
ESX1_K193R
0.649
0.404
Lhx4
M00430_2.00
Mus musculus
NYAATHN
NDATTRN
PBM
Berger et al.(2008)
Lhx4_1719
0.643
0.456
Lhx3
M00435_2.00
Mus musculus
NNNYAATHW
WDATTRNNN
PBM
Berger et al.(2008)
Lhx3_3431
0.643
0.456
Lhx4
M03257_2.00
Mus musculus
BTAATTRN
NYAATTAV
SELEX
Jolma et al.(2013)
Lhx4_1
0.643
0.456
LHX4
M05063_2.00
Homo sapiens
BYAATYRV
BYRATTRV
SELEX
Yin et al.(2017)
LHX4_eDBD_HT-SELEX
0.643
0.456
LHX4
M05066_2.00
Homo sapiens
BTAATTAN
NTAATTAV
SELEX
Yin et al.(2017)
LHX4_FL_HT-SELEX
0.643
0.456
Lhx3
M02687_2.00
Mus musculus
VRWTAATTAATTW
WAATTAATTAWYB
SELEX
Mathelier et al.(2014)
MA0135.1
0.643
0.456
LHX3
M09137_2.00
Homo sapiens
NYTAATTAAWTHH
DDAWTTAATTARN
Misc
Kulakovskiy et al.(2013)
LHX3_HUMAN.H11MO.0.C
0.643
0.456
Lhx3
M09188_2.00
Mus musculus
NYTRATKRV
BYMATYARN
Misc
Kulakovskiy et al.(2013)
LHX3_MOUSE.H11MO.0.C
0.643
0.456
Lhx3
M09570_2.00
Mus musculus
NNBTAATTAV
BTAATTAVNN
Misc
Heinz et al.(2010)
Neuron-Lhx3_GSE31456
0.643
0.456
LHX3
M10657_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$LHX3A_01
0.643
0.456
LHX3
M10658_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$LHX3b_01
0.643
0.456
LHX3
M10659_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$LHX3_Q3
0.643
0.456
LHX4
M05064_2.00
Homo sapiens
BYAATTRV
BYAATTRV
SELEX
Yin et al.(2017)
LHX4_eDBD_Methyl-HT-SELEX_1
0.643
0.456
LHX4
M05065_2.00
Homo sapiens
NTWAYGHN
NDCRTWAN
SELEX
Yin et al.(2017)
LHX4_eDBD_Methyl-HT-SELEX_2
0.643
0.456
LHX4
M05067_2.00
Homo sapiens
NYAATTRN
NYAATTRN
SELEX
Yin et al.(2017)
LHX4_FL_Methyl-HT-SELEX_1
0.643
0.456
LHX4
M05068_2.00
Homo sapiens
NTAAYGHN
NDCRTTAN
SELEX
Yin et al.(2017)
LHX4_FL_Methyl-HT-SELEX_2
0.643
0.456
lim-4
M02182_2.00
Caenorhabditis elegans
YTAATTRVN
NBYAATTAR
PBM
Weirauch et al.(2014)
pTH6366
0.641
0.404
Awh
M02121_2.00
Drosophila melanogaster
NNTAATTANN
NNTAATTANN
PBM
Weirauch et al.(2014)
pTH5759
0.641
0.386
Awh
M03831_2.00
Drosophila melanogaster
BTAATTRV
BYAATTAV
SELEX
Nitta et al.(2015)
Awh_1
0.641
0.386
Awh
M06513_2.00
Drosophila melanogaster
YTAATTA
TAATTAR
B1H
Mathelier et al.(2014)
MA0167.1
0.641
0.386
Awh
M06303_2.00
Drosophila melanogaster
YTAATTA
TAATTAR
B1H
Zhu et al.(2011)
Awh_Cell_FBgn0013751
0.641
0.386
Awh
M06304_2.00
Drosophila melanogaster
YTAATKR
YMATTAR
B1H
Zhu et al.(2011)
Awh_SOLEXA_FBgn0013751
0.641
0.386
LHX2
M02085_2.00
Homo sapiens
NNNYAAHDDN
NHHDTTRNNN
PBM
Weirauch et al.(2014)
pTH5812
0.633
0.439
Lhx2
M00380_2.00
Mus musculus
NTAATKRN
NYMATTAN
PBM
Berger et al.(2008)
Lhx2_0953
0.633
0.439
Lhx9
M00406_2.00
Mus musculus
NTAATDRN
NYHATTAN
PBM
Berger et al.(2008)
Lhx9_3492
0.633
0.439
LHX2
M03106_2.00
Homo sapiens
NNTAATTAGN
NCTAATTANN
SELEX
Jolma et al.(2013)
LHX2_1
0.633
0.439
LHX2
M03107_2.00
Homo sapiens
YAATTANVCTAATTR
YAATTAGBNTAATTR
SELEX
Jolma et al.(2013)
LHX2_2
0.633
0.439
LHX9
M03163_2.00
Homo sapiens
NTAATTRN
NYAATTAN
SELEX
Jolma et al.(2013)
LHX9_1
0.633
0.439
LHX9
M03164_2.00
Homo sapiens
TAATTRGYMATTA
TAATKRCYAATTA
SELEX
Jolma et al.(2013)
LHX9_2
0.633
0.439
LHX9
M05170_2.00
Homo sapiens
YTAATTRG
CYAATTAR
SELEX
Yin et al.(2017)
LHX9_eDBD_HT-SELEX
0.633
0.439
LHX9
M05173_2.00
Homo sapiens
NTAATTRG
CYAATTAN
SELEX
Yin et al.(2017)
LHX9_FL_HT-SELEX
0.633
0.439
LHX2
M09136_2.00
Homo sapiens
NBYTAATTRVNB
VNBYAATTARVN
Misc
Kulakovskiy et al.(2013)
LHX2_HUMAN.H11MO.0.A
0.633
0.439
Lhx2
M09169_2.00
Mus musculus
NNTAATKRGN
NCYMATTANN
Misc
Kulakovskiy et al.(2013)
LHX2_MOUSE.H11MO.0.A
0.633
0.439
Lhx2
M09562_2.00
Mus musculus
NYTAATTA
TAATTARN
Misc
Heinz et al.(2010)
HFSC-Lhx2_GSE48068
0.633
0.439
LHX2
M10655_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$LHX2_Q4
0.633
0.439
LHX2
M10656_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$LHX2_Q6
0.633
0.439
LHX9
M05171_2.00
Homo sapiens
YTAATTRS
SYAATTAR
SELEX
Yin et al.(2017)
LHX9_eDBD_Methyl-HT-SELEX_1
0.633
0.439
LHX9
M05172_2.00
Homo sapiens
HTAACGAB
VTCGTTAD
SELEX
Yin et al.(2017)
LHX9_eDBD_Methyl-HT-SELEX_2
0.633
0.439
LHX9
M05174_2.00
Homo sapiens
NTAATTRV
BYAATTAN
SELEX
Yin et al.(2017)
LHX9_FL_Methyl-HT-SELEX_1
0.633
0.439
LHX9
M05175_2.00
Homo sapiens
HTAACGAB
VTCGTTAD
SELEX
Yin et al.(2017)
LHX9_FL_Methyl-HT-SELEX_2
0.633
0.439
ap
M06478_2.00
Drosophila melanogaster
YTAATKA
TMATTAR
B1H
Mathelier et al.(2014)
MA0209.1
0.631
0.439
ap
M06214_2.00
Drosophila melanogaster
VYTAATKA
TMATTARB
B1H
Zhu et al.(2011)
Ap_Cell_FBgn0000099
0.631
0.439
ap
M06215_2.00
Drosophila melanogaster
BAATHA
TDATTV
B1H
Zhu et al.(2011)
ap_FlyReg_FBgn0000099
0.631
0.439
ap
M06216_2.00
Drosophila melanogaster
HTAATKR
YMATTAD
B1H
Zhu et al.(2011)
Ap_SOLEXA_FBgn0000099
0.631
0.439
ap
M10781_2.00
Drosophila melanogaster
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
I$AP_Q6
0.631
0.439
Lim3
M02116_2.00
Drosophila melanogaster
NNNNNATBRN
NYVATNNNNN
PBM
Weirauch et al.(2014)
pTH6478
0.631
0.439
Lim3
M03796_2.00
Drosophila melanogaster
BTAATTAV
BTAATTAV
SELEX
Nitta et al.(2015)
Lim3_1
0.631
0.439
Lim3
M06492_2.00
Drosophila melanogaster
HTAATKA
TMATTAD
B1H
Mathelier et al.(2014)
MA0195.1
0.631
0.439
Lim3
M06258_2.00
Drosophila melanogaster
HHTAATKA
TMATTADD
B1H
Zhu et al.(2011)
Lim3_Cell_FBgn0002023
0.631
0.439
Lim3
M06259_2.00
Drosophila melanogaster
HTRATTR
YAATYAD
B1H
Zhu et al.(2011)
Lim3_SOLEXA_FBgn0002023
0.631
0.439
ENSTNIG00000017092
M02109_2.00
Tetraodon nigroviridis
YYAATCAD
HTGATTRR
PBM
Weirauch et al.(2014)
pTH6064
0.627
0.386
SNAPOd2T00006145001
M02230_2.00
Oikopleura dioica
NNTRATKRNN
NNYMATYANN
PBM
Weirauch et al.(2014)
pTH5930
0.626
0.404
Q4RRY4_TETNG
M02169_2.00
Tetraodon nigroviridis
NNYAATYAN
NTRATTRNN
PBM
Weirauch et al.(2014)
pTH6326
0.615
0.333
zfh-2
M01850_2.00
Caenorhabditis elegans
NYTAATTARNN
NNYTAATTARN
PBM
Weirauch et al.(2014)
pTH6132
0.600
0.474
zfhx4
M02108_2.00
Tetraodon nigroviridis
NNTAATTRN
NYAATTANN
PBM
Weirauch et al.(2014)
pTH5654
0.600
0.404
MIXL1
M03231_2.00
Homo sapiens
NNTAATTRNN
NNYAATTANN
SELEX
Jolma et al.(2013)
MIXL1_1
0.599
0.386
MIXL1
M05359_2.00
Homo sapiens
TAATBNVATTA
TAATBNVATTA
SELEX
Yin et al.(2017)
MIXL1_FL_HT-SELEX
0.599
0.386
MIXL1
M10747_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$MIXL1_02
0.599
0.386
Mixl1
M10765_2.00
Mus musculus
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$MIXL1_03
0.599
0.386
MIXL1
M05360_2.00
Homo sapiens
TAATYNRATTA
TAATYNRATTA
SELEX
Yin et al.(2017)
MIXL1_FL_Methyl-HT-SELEX_1
0.599
0.386
MIXL1
M05361_2.00
Homo sapiens
TAATYDCRTTA
TAAYGHRATTA
SELEX
Yin et al.(2017)
MIXL1_FL_Methyl-HT-SELEX_2
0.599
0.386
For this family, TFs with SR scores >
0.599
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
T265_11894
Homeodomain
134
190
KRMRTSLTDDQRLHMQRVYESNPRPSKEAREKLANELGVPLRVVQVWFQNQRARDRR
Links
Other
Homeodomain
family TFs
Other
Opisthorchis viverrini
TFs
1323 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Invalid Input OrderBy