CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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COCMIDRAFT_84872
(
Bipolaris oryzae
)
Zinc cluster
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF00172 (Zn_clus)
IPR001138
COCMIDRAFT_84872
T365080_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
NCU00155
M02583_2.00
Neurospora crassa
NNCGGNNNN
NNNNCCGNN
PBM
Weirauch et al.(2014)
pTH8610
0.592
0.842
ASG1
M00088_2.00
Saccharomyces cerevisiae
CGGRDNN
NNHYCCG
PBM
Badis et al.(2008)
ASG1_2140
0.573
0.711
ASG1
M01581_2.00
Saccharomyces cerevisiae
NCGGNDNN
NNHNCCGN
PBM
Zhu et al.(2009)
Asg1
0.573
0.711
ASG1
M07515_2.00
Saccharomyces cerevisiae
CCGGAW
WTCCGG
PBM, CSA and or DIP-chip
Mathelier et al.(2014)
MA0275.1
0.573
0.711
ASG1
M08666_2.00
Saccharomyces cerevisiae
CCGGAW
WTCCGG
Misc
DeBoer et al.(2011)
YIL130W_529
0.573
0.711
ASG1
M08667_2.00
Saccharomyces cerevisiae
CCGGVWMHMDBCCGGD
HCCGGVHKDKWBCCGG
Misc
DeBoer et al.(2011)
YIL130W_807
0.573
0.711
For this family, TFs with SR scores >
0.537
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
EUC49355
Zinc cluster
60
97
RACDECRRKKIKCDGKQPCTHCTVYSYGITYDQPSNRR
Links
Other
Zinc cluster
family TFs
Other
Bipolaris oryzae
TFs
164 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Invalid Input OrderBy