CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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Cla007697
(
Citrullus lanatus
)
AP2
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00847 (AP2)
IPR001471
Cla007697
T006435_2.00
GigaDB (2015-Oct-22)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
ERF094
M01602_2.00
Arabidopsis thaliana
VGCCGCCD
HGGCGGCB
PBM
Weirauch et al.(2014)
pTH8276
0.788
0.846
P93392_TOBAC
M09731_2.00
Nicotiana tabacum
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$OPBP1_01
0.775
0.846
ERF096
M01630_2.00
Arabidopsis thaliana
NVGCCGNCNN
NNGNCGGCBN
PBM
Weirauch et al.(2014)
pTH7909
0.748
0.769
ERF14
M01045_2.00
Arabidopsis thaliana
NVGCCGNCN
NGNCGGCBN
PBM
Sullivan et al.(2014)
pTH9793
0.728
0.750
ERF1B
M01619_2.00
Arabidopsis thaliana
NMGCCGCCRN
NYGGCGGCKN
PBM
Weirauch et al.(2014)
pTH8795
0.720
0.827
ERF1B
M06626_2.00
Arabidopsis thaliana
NHNNHDYMGCCGCCRYHDNHDNNNNNNN
NNNNNNNHDNHDRYGGCGGCKRHDNNDN
Dap-seq
OMalley et al.(2016)
ERF1_col_a
0.720
0.827
ERF1B
M06627_2.00
Arabidopsis thaliana
MGCCGCCD
HGGCGGCK
Dap-seq
OMalley et al.(2016)
ERF1_colamp_a
0.720
0.827
ERF1B
M09703_2.00
Arabidopsis thaliana
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$ERF1_Q2_01
0.720
0.827
ERF1B
M09704_2.00
Arabidopsis thaliana
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$ERF1_Q2
0.720
0.827
ERF095
M06624_2.00
Arabidopsis thaliana
YCDCCGCCGCCRYHD
HDRYGGCGGCGGHGR
Dap-seq
OMalley et al.(2016)
ESE1_col_a
0.692
0.750
ERF095
M06625_2.00
Arabidopsis thaliana
YHNYYDYHDCCGCCGCCDYH
DRHGGCGGCGGHDRHRRNDR
Dap-seq
OMalley et al.(2016)
ESE1_colamp_a
0.692
0.750
ERF105
M01632_2.00
Arabidopsis thaliana
CGCCGGCM
KGCCGGCG
PBM
Weirauch et al.(2014)
pTH7233
0.688
0.692
ERF105
M06676_2.00
Arabidopsis thaliana
NHNNNNNNNNHNNHDBCGCCGCCR
YGGCGGCGVHDNNDNNNNNNNNDN
Dap-seq
OMalley et al.(2016)
ERF105_colamp_a
0.688
0.692
ERF105
M06677_2.00
Arabidopsis thaliana
HDSCGCCGCCRYHDH
DHDRYGGCGGCGSHD
Dap-seq
OMalley et al.(2016)
ERF105_col
0.688
0.692
ERF104
M06682_2.00
Arabidopsis thaliana
NNHHDYMDCCGCCGCCRYH
DRYGGCGGCGGHKRHDDNN
Dap-seq
OMalley et al.(2016)
ERF104_col_a
0.687
0.654
ERF104
M06683_2.00
Arabidopsis thaliana
BHDSCGCCGCCRYHD
HDRYGGCGGCGSHDV
Dap-seq
OMalley et al.(2016)
ERF104_colamp_a
0.687
0.654
For this family, TFs with SR scores >
0.677
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Cla007697
AP2
87
139
KSYRGVRRRPWGKFAAEIRDSTRHGVRVWLGTFDSAEAAALAYDQAAFSMRGP
Links
Other
AP2
family TFs
Other
Citrullus lanatus
TFs
624 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Invalid Input OrderBy