CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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Cucsa.079940
(
Cucumis sativus
)
C2H2 ZF
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00096 (zf-C2H2)
IPR007087
Cucsa.079940
T137907_2.00
JGI (2012-Mar-17)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
STOP1
M06801_2.00
Arabidopsis thaliana
CCTBCMCCAGDTRHHMCYY
RRGKDDYAHCTGGKGVAGG
Dap-seq
OMalley et al.(2016)
STOP1_col_a
0.821
0.956
STOP1
M06802_2.00
Arabidopsis thaliana
RCCTNCMCCRGWWRN
NYWWCYGGKGNAGGY
Dap-seq
OMalley et al.(2016)
STOP1_colamp_a
0.821
0.956
For this family, TFs with SR scores >
0.755
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Cucsa.079940.1
C2H2 ZF
339
368
RTHCDKSFTCSKCNSKKFSVIADLKTHEKH
Cucsa.079940.1
C2H2 ZF
367
398
KHCGKDKWLCSCGTTFSRKDKLFGHIALFQGH
Links
Other
C2H2 ZF
family TFs
Other
Cucumis sativus
TFs
78 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Invalid Input OrderBy