CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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evm.TU.supercontig_3.402
(
Carica papaya
)
Homeodomain
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00046 (Homeobox)
IPR001356
evm.TU.supercontig_3.402
T228552_2.00
JGI:Phytozome (2018-Apr-12)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
WUS
M06905_2.00
Arabidopsis thaliana
TRAWTGAWTGA
TCAWTCAWTYA
Dap-seq
OMalley et al.(2016)
WUS1_col_a
0.740
0.754
WUS
M06906_2.00
Arabidopsis thaliana
TGAWTGAWTGW
WCAWTCAWTCA
Dap-seq
OMalley et al.(2016)
WUS1_colamp_a
0.740
0.754
WOX13
M02049_2.00
Arabidopsis thaliana
YTGATTGA
TCAATCAR
PBM
Weirauch et al.(2014)
pTH6461
0.618
0.439
WOX13
M00866_2.00
Arabidopsis thaliana
NNTGATTGAN
NTCAATCANN
PBM
Franco-Zorrilla et al.(2014)
WOX13
0.618
0.439
GRMZM2G038252
M02137_2.00
Zea mays
HTRATTGV
BCAATYAD
PBM
Weirauch et al.(2014)
pTH6141
0.618
0.439
For this family, TFs with SR scores >
0.599
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
evm.model.supercontig_3.402
Homeodomain
83
144
VSSRWNPTPEQLRTLEELYRRGTRTPTADQIQHITAQLRRYGKIEGKNVFYWFQNHKARERQ
Links
Other
Homeodomain
family TFs
Other
Carica papaya
TFs
579 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Invalid Input OrderBy