PRDM9 (Homo sapiens)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00096 (zf-C2H2) IPR007087 ENSG00000164256 T095025_2.00 Ensembl (2018-Dec-8) Link out
NCBI Gene Info:
The protein encoded by this gene is a zinc finger protein with histone methyltransferase activity that catalyzes histone H3 lysine 4 trimethylation (H3K4me3) during meiotic prophase. This protein contains multiple domains, including a Kruppel-associated box (KRAB) domain, an SSX repression domain (SSXRD), a PRD1-BF1 and RIZ homologous region, a subclass of SET (PR/SET) domain, and a tandem array of C2H2 zinc fingers. The zinc finger array recognizes a short sequence motif, leading to local H3K4me3, and meiotic recombination hotspot activity. The observed allelic variation alters the DNA-binding sequence specificity of the protein, resulting in distinct meiotic recombination hotspots amongst individuals and populations. Multiple alternate alleles of this gene have been described. [provided by RefSeq, Jul 2015]

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
PRDM9
M07610_2.00
Homo sapiens
BYYBYTNNNNCCHCCSYNVCCNCB

VGNGGBNRSGGDGGNNNNARVRRV
ChIP-seq+ChIP-exo
Barazandeh et al.(2018)
PRDM9.RCADE.ReprocessedData
(Direct) (Direct)

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ENSP00000296682 C2H2 ZF 527 546
ENSP00000296682 C2H2 ZF 552 574
ENSP00000296682 C2H2 ZF 580 602
ENSP00000296682 C2H2 ZF 608 630
ENSP00000296682 C2H2 ZF 636 658
ENSP00000296682 C2H2 ZF 664 686
ENSP00000296682 C2H2 ZF 692 714
ENSP00000296682 C2H2 ZF 720 742
ENSP00000296682 C2H2 ZF 748 770
ENSP00000296682 C2H2 ZF 776 798
ENSP00000296682 C2H2 ZF 804 826
ENSP00000296682 C2H2 ZF 832 854
ENSP00000296682 C2H2 ZF 860 882

Links

Other C2H2 ZF family TFs
Other Homo sapiens TFs

0 Related TFs

">No related TF found