CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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fgenesh2_pg.scaffold_1006000004
(
Branchiostoma floridae
)
C2H2 ZF
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00096 (zf-C2H2)
IPR007087
fgenesh2_pg.scaffold_1006000004
T139081_2.00
JGI (2012-Mar-17)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No TFs with similar DNA binding domains
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
fgenesh2_pg.scaffold_1006000004
C2H2 ZF
158
180
YKCDQCDYSATRKDYLKSHLVKH
fgenesh2_pg.scaffold_1006000004
C2H2 ZF
186
208
YMCGECGQRTAHRSALTKHTRIH
fgenesh2_pg.scaffold_1006000004
C2H2 ZF
214
236
YKCDQCNFSAARKDSFDLHIAKH
fgenesh2_pg.scaffold_1006000004
C2H2 ZF
242
264
YMCGECGYRAAHRSDLTKHMRVH
fgenesh2_pg.scaffold_1006000004
C2H2 ZF
270
292
YKCDMCDYSSVRKRDLNRHKSKH
fgenesh2_pg.scaffold_1006000004
C2H2 ZF
312
334
LICIECDYRTTSKIDLVRHAKTH
fgenesh2_pg.scaffold_1006000004
C2H2 ZF
340
362
YKCVQCDFSATRKDYFDRHIAKH
fgenesh2_pg.scaffold_1006000004
C2H2 ZF
368
390
YTCGDCEFRAACKSNLTTHMKIH
fgenesh2_pg.scaffold_1006000004
C2H2 ZF
396
418
YKCGKCDYSSLRKYDLNRHLSTH
fgenesh2_pg.scaffold_1006000004
C2H2 ZF
438
460
FACEKCDYMAAKKSDLFRHNRTH
fgenesh2_pg.scaffold_1006000004
C2H2 ZF
466
488
YKCDQCDYSATRKNYLDRHRTKH
fgenesh2_pg.scaffold_1006000004
C2H2 ZF
494
516
FVCGECGFRTADNYSLTVHMRKH
fgenesh2_pg.scaffold_1006000004
C2H2 ZF
522
544
FKCDQCDYAAAQKGDLNLHKAKH
fgenesh2_pg.scaffold_1006000004
C2H2 ZF
550
572
YICDECGFRTANKSTLVNHMRKH
fgenesh2_pg.scaffold_1006000004
C2H2 ZF
578
600
YKCDQCDYSAARKSYLDQHKLRH
Links
Other
C2H2 ZF
family TFs
Other
Branchiostoma floridae
TFs
0 Related TFs
">No related TF found