CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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fgenesh2_pg.scaffold_11000260
(
Branchiostoma floridae
)
C2H2 ZF
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00096 (zf-C2H2)
IPR007087
fgenesh2_pg.scaffold_11000260
T139116_2.00
JGI (2012-Mar-17)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No TFs with similar DNA binding domains
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
fgenesh2_pg.scaffold_11000260
C2H2 ZF
152
174
YMCGDCGYRAAYRSSLYLHMSTH
fgenesh2_pg.scaffold_11000260
C2H2 ZF
183
205
YMCRDCDYRTAHKSALSQHMRTH
fgenesh2_pg.scaffold_11000260
C2H2 ZF
211
233
YKCDQCDYSATQKNNLNRHRAKH
fgenesh2_pg.scaffold_11000260
C2H2 ZF
239
261
YKCDQCDYSAARKDTLDRHMASH
fgenesh2_pg.scaffold_11000260
C2H2 ZF
289
311
YVCEECSYRASGRTDLTNHMRKH
fgenesh2_pg.scaffold_11000260
C2H2 ZF
346
368
YMCEKCGHRTANVSGLTNHMKKH
fgenesh2_pg.scaffold_11000260
C2H2 ZF
374
396
YKCDQCDYSAAQKSTLDQHMVRH
fgenesh2_pg.scaffold_11000260
C2H2 ZF
402
424
YMCGECGFKTAHKFSLSLHMRTH
fgenesh2_pg.scaffold_11000260
C2H2 ZF
430
452
YKCDQCDCSYTVKGHLDRHMAKH
fgenesh2_pg.scaffold_11000260
C2H2 ZF
458
480
YMCEECGYRTADKSCLSKHMKTH
fgenesh2_pg.scaffold_11000260
C2H2 ZF
549
571
HVCSQCGYIADSMSSLDVHTRRH
fgenesh2_pg.scaffold_11000260
C2H2 ZF
604
626
YMCGECGYRTGKMPKLTEHMRTH
fgenesh2_pg.scaffold_11000260
C2H2 ZF
635
658
YKCDQCDYSAAQKGTLDRHVMAKH
fgenesh2_pg.scaffold_11000260
C2H2 ZF
664
686
YMCGECGFRTADRYTLTVHMRRH
fgenesh2_pg.scaffold_11000260
C2H2 ZF
779
801
HTCKQCGYAAENMSSLAVHTSRH
fgenesh2_pg.scaffold_11000260
C2H2 ZF
834
856
YMCGECGYRTNIMSNLTEHMRTH
fgenesh2_pg.scaffold_11000260
C2H2 ZF
862
884
YICRECGYRTAHQFYLLTHMRTH
fgenesh2_pg.scaffold_11000260
C2H2 ZF
890
912
YKCDRCDYSAAQKGSLKQHKAIH
fgenesh2_pg.scaffold_11000260
C2H2 ZF
920
942
YTCDECGYTTAQRSKLSRHMRRH
fgenesh2_pg.scaffold_11000260
C2H2 ZF
977
999
YMCEKCGYRTATKSRLSQHMKVH
fgenesh2_pg.scaffold_11000260
C2H2 ZF
1005
1027
YKCDQCDFSSPWKKSLGTHMAKH
fgenesh2_pg.scaffold_11000260
C2H2 ZF
1033
1055
YMCGECGYRTADRSCLSKHLRTH
fgenesh2_pg.scaffold_11000260
C2H2 ZF
1196
1218
YMCGECGYRTDNMRTLTVHMRKH
fgenesh2_pg.scaffold_11000260
C2H2 ZF
1224
1246
YACSDCEFRTAQKSSLSLHMRKH
fgenesh2_pg.scaffold_11000260
C2H2 ZF
1252
1274
YKCDQCDYSAAQKITLIRHIAKH
fgenesh2_pg.scaffold_11000260
C2H2 ZF
1307
1329
FMCGECGYRTADKSSLTVHMRKH
fgenesh2_pg.scaffold_11000260
C2H2 ZF
1335
1357
YLCMECGFRTAHSSSLSLHMRTH
fgenesh2_pg.scaffold_11000260
C2H2 ZF
1363
1385
YKCDQCDYSAAQKINLVRHIAKH
fgenesh2_pg.scaffold_11000260
C2H2 ZF
1390
1412
YKCDQCDYSAAQKITLNRHMVKH
fgenesh2_pg.scaffold_11000260
C2H2 ZF
1417
1439
YKCDQCDYSAAQKIILNRHMVKH
fgenesh2_pg.scaffold_11000260
C2H2 ZF
1500
1522
YVCEECGYRTVSRCRLSEHVKIH
fgenesh2_pg.scaffold_11000260
C2H2 ZF
1528
1550
YKCDKCEYSSVRKSTLHRHMATH
Links
Other
C2H2 ZF
family TFs
Other
Branchiostoma floridae
TFs
0 Related TFs
">No related TF found