CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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fgenesh2_pg.scaffold_1109000001
(
Branchiostoma floridae
)
C2H2 ZF
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00096 (zf-C2H2)
IPR007087
fgenesh2_pg.scaffold_1109000001
T139120_2.00
JGI (2012-Mar-17)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No TFs with similar DNA binding domains
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
fgenesh2_pg.scaffold_1109000001
C2H2 ZF
26
48
HKCGECDKEFHHLTDMKRHTCTH
fgenesh2_pg.scaffold_1109000001
C2H2 ZF
54
76
FRCEDCGKQFSVPSHLKIHMRTH
fgenesh2_pg.scaffold_1109000001
C2H2 ZF
83
99
NKQFSQLGSLKIHMRTH
fgenesh2_pg.scaffold_1109000001
C2H2 ZF
105
127
YRCNECSKQFRVLGHLKQHIKTH
fgenesh2_pg.scaffold_1109000001
C2H2 ZF
133
155
YKCEECGRQFSEQGSLKRHKKTH
fgenesh2_pg.scaffold_1109000001
C2H2 ZF
170
199
YTCGLIPVRSDNCGKQFSVLYNLQKHIKTH
fgenesh2_pg.scaffold_1109000001
C2H2 ZF
205
227
YKCEECGKQFSLLNNLKIHMRTH
fgenesh2_pg.scaffold_1109000001
C2H2 ZF
233
255
YRCDECSKQFSQHSSLKSHMRNH
Links
Other
C2H2 ZF
family TFs
Other
Branchiostoma floridae
TFs
0 Related TFs
">No related TF found