CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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fgenesh2_pg.scaffold_12000085
(
Branchiostoma floridae
)
C2H2 ZF
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00096 (zf-C2H2)
IPR007087
fgenesh2_pg.scaffold_12000085
T139145_2.00
JGI (2012-Mar-17)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No TFs with similar DNA binding domains
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
fgenesh2_pg.scaffold_12000085
C2H2 ZF
43
65
HKCAQCDFSTAYKCEFSIHMLQH
fgenesh2_pg.scaffold_12000085
C2H2 ZF
71
94
FECKKCGYITTSRSHFKQHSSRSH
fgenesh2_pg.scaffold_12000085
C2H2 ZF
96
118
MKCDECDFSTSEIRKLQEHKRKH
fgenesh2_pg.scaffold_12000085
C2H2 ZF
124
145
FVCEKCDYEATHKTDLTKHMQK
fgenesh2_pg.scaffold_12000085
C2H2 ZF
180
202
FKCDECDFTANDKDRLERHVLRH
fgenesh2_pg.scaffold_12000085
C2H2 ZF
209
230
YGCEQCGYETTKSHELARHTCA
fgenesh2_pg.scaffold_12000085
C2H2 ZF
231
253
FNCDLCDFSTSRKFTLNQHKLNH
fgenesh2_pg.scaffold_12000085
C2H2 ZF
259
282
HKCQKCGYGASSRFGLSKHLSKHH
fgenesh2_pg.scaffold_12000085
C2H2 ZF
289
311
HKCGQCDFSTERKCNLVQHMAMH
fgenesh2_pg.scaffold_12000085
C2H2 ZF
316
338
YVCEKCGHETTHRFKLAQHMKIH
fgenesh2_pg.scaffold_12000085
C2H2 ZF
344
366
FNCDECDFSTRWKSCLDLHKRKH
fgenesh2_pg.scaffold_12000085
C2H2 ZF
372
395
FKCDKCGYGAVSRSLLLKHLRTHH
fgenesh2_pg.scaffold_12000085
C2H2 ZF
403
425
FRCAHCDFSTVRKCNLVQHMAVH
Links
Other
C2H2 ZF
family TFs
Other
Branchiostoma floridae
TFs
0 Related TFs
">No related TF found