CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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fgenesh2_pg.scaffold_1487000002
(
Branchiostoma floridae
)
C2H2 ZF
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00096 (zf-C2H2)
IPR007087
fgenesh2_pg.scaffold_1487000002
T139200_2.00
JGI (2012-Mar-17)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No TFs with similar DNA binding domains
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
fgenesh2_pg.scaffold_1487000002
C2H2 ZF
28
50
YRCGQCEYSTANRSYLSLHKKVH
fgenesh2_pg.scaffold_1487000002
C2H2 ZF
56
78
YSCDLCDVCTAKKADMDKHKATH
fgenesh2_pg.scaffold_1487000002
C2H2 ZF
84
106
YTCEVCGVRMGSKSNLWIHMKTH
fgenesh2_pg.scaffold_1487000002
C2H2 ZF
112
134
YGCGECEYTTFVKSNMMVHMDVH
fgenesh2_pg.scaffold_1487000002
C2H2 ZF
140
162
YKCDQCDFSTAWKGSLDTHKKRH
fgenesh2_pg.scaffold_1487000002
C2H2 ZF
168
190
FMCGVCGHRAAQKAAISQHMKTH
fgenesh2_pg.scaffold_1487000002
C2H2 ZF
196
218
YKCDQCDFCTAWKTSLDIHLAKH
fgenesh2_pg.scaffold_1487000002
C2H2 ZF
224
246
YMCGECGFRTVYKHSLAKHMTTH
fgenesh2_pg.scaffold_1487000002
C2H2 ZF
255
278
YRCPLCDYSAVQRKVLEAHVMSKH
fgenesh2_pg.scaffold_1487000002
C2H2 ZF
284
306
YACTECGFRTAHQSGLSRHMDTH
fgenesh2_pg.scaffold_1487000002
C2H2 ZF
312
334
YKCDQCDFCAVRKDRLDRHRATH
fgenesh2_pg.scaffold_1487000002
C2H2 ZF
340
362
FVCNKCGYRTTSRSHLSKHFTTH
Links
Other
C2H2 ZF
family TFs
Other
Branchiostoma floridae
TFs
0 Related TFs
">No related TF found