CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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fgenesh2_pg.scaffold_34000203
(
Branchiostoma floridae
)
C2H2 ZF
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00096 (zf-C2H2)
IPR007087
fgenesh2_pg.scaffold_34000203
T139481_2.00
JGI (2012-Mar-17)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No TFs with similar DNA binding domains
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
fgenesh2_pg.scaffold_34000203
C2H2 ZF
185
207
YMCGECGYRTAHKSDLTIHMRIH
fgenesh2_pg.scaffold_34000203
C2H2 ZF
213
235
YKCDQCDYSAVQKSALNQHVGKH
fgenesh2_pg.scaffold_34000203
C2H2 ZF
241
263
YMCGECGFRTAQKCNLSVHMRIH
fgenesh2_pg.scaffold_34000203
C2H2 ZF
269
291
YKCDQCDYSAAHKSSLEQHVAKH
fgenesh2_pg.scaffold_34000203
C2H2 ZF
297
319
YMCWECGYRTAKKCHLSRHMRTH
fgenesh2_pg.scaffold_34000203
C2H2 ZF
325
347
YKCDRCDYSAADKLTLDIHLRSH
fgenesh2_pg.scaffold_34000203
C2H2 ZF
353
375
YMCGECGYRATQKAHLSRHMRTH
fgenesh2_pg.scaffold_34000203
C2H2 ZF
381
403
YKCDQCDYSATQKSSLDRHQRKH
fgenesh2_pg.scaffold_34000203
C2H2 ZF
640
662
YMCGECGYRAVQKSDLLVHLRTH
fgenesh2_pg.scaffold_34000203
C2H2 ZF
668
690
YMCGECGYKAARKSYLSTHMRIH
fgenesh2_pg.scaffold_34000203
C2H2 ZF
696
718
YKCDQCDYSAAHKSSLEQHVAKH
fgenesh2_pg.scaffold_34000203
C2H2 ZF
724
746
YMCGECGYRAFQKSDLSKHMRTH
fgenesh2_pg.scaffold_34000203
C2H2 ZF
752
774
FKCNQCDYSAAVKSTLYKHLAKH
fgenesh2_pg.scaffold_34000203
C2H2 ZF
780
802
YLCGECGYRASRNNDLSIHMRTH
fgenesh2_pg.scaffold_34000203
C2H2 ZF
808
830
YMCGKCGYRTARRGRLSLHMKTH
fgenesh2_pg.scaffold_34000203
C2H2 ZF
836
858
YKCEQCGYSAAEKSNLVKHIRKH
fgenesh2_pg.scaffold_34000203
C2H2 ZF
864
886
YMCGECGYRTAFKSSLYTHLRTH
fgenesh2_pg.scaffold_34000203
C2H2 ZF
892
914
YKCDQCDYSAVDKFSLNRHERTH
Links
Other
C2H2 ZF
family TFs
Other
Branchiostoma floridae
TFs
0 Related TFs
">No related TF found