CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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fgenesh2_pg.scaffold_407000006
(
Branchiostoma floridae
)
C2H2 ZF
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00096 (zf-C2H2)
IPR007087
fgenesh2_pg.scaffold_407000006
T139542_2.00
JGI (2012-Mar-17)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No TFs with similar DNA binding domains
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
fgenesh2_pg.scaffold_407000006
C2H2 ZF
10
32
YKCDQCEYSAAHKGDLDKHLVKH
fgenesh2_pg.scaffold_407000006
C2H2 ZF
38
60
FMCGECGYRSAQKSNLSTHMRTH
fgenesh2_pg.scaffold_407000006
C2H2 ZF
66
88
YKCDQCGYRTAWKSHLSQHMRTH
fgenesh2_pg.scaffold_407000006
C2H2 ZF
94
116
YKCDQCDYSAAQKSTLDQHVIKH
fgenesh2_pg.scaffold_407000006
C2H2 ZF
122
144
YNCEMCGYRTAKKSHLSRHMRTH
fgenesh2_pg.scaffold_407000006
C2H2 ZF
150
172
FKCDQCDYSAAHKSTLDEHVTTH
fgenesh2_pg.scaffold_407000006
C2H2 ZF
178
200
YMCGECGFRATRKSELSRHMRTH
fgenesh2_pg.scaffold_407000006
C2H2 ZF
206
228
YKCDQCDYSAARKCTLDEHLTIH
fgenesh2_pg.scaffold_407000006
C2H2 ZF
243
265
YKCDQCDYSAAQKSSLDQHLSKH
fgenesh2_pg.scaffold_407000006
C2H2 ZF
271
293
YMCGECGHRTASKSRLSLHMRTH
fgenesh2_pg.scaffold_407000006
C2H2 ZF
299
321
YKCDQCDYSAAQKSSLDQHLSKH
fgenesh2_pg.scaffold_407000006
C2H2 ZF
327
349
YMCGECGHRTASKSRLSLHMRTH
fgenesh2_pg.scaffold_407000006
C2H2 ZF
356
369
KCDQSHLSRHMRTH
fgenesh2_pg.scaffold_407000006
C2H2 ZF
403
425
YMCGECGYRTAKKSHLSRHTRTH
fgenesh2_pg.scaffold_407000006
C2H2 ZF
459
481
YMCEMCGYRTAKKSHLTEHVRTH
fgenesh2_pg.scaffold_407000006
C2H2 ZF
487
509
YMCGECGYRAARKHNLSLHMRTH
fgenesh2_pg.scaffold_407000006
C2H2 ZF
515
537
YKCDLCDYSAAQKGDLDKHLVRH
fgenesh2_pg.scaffold_407000006
C2H2 ZF
543
565
YMCGECGYRSAEKSDLSKHMRTH
fgenesh2_pg.scaffold_407000006
C2H2 ZF
571
593
YKCDQCDYSAAVKHHLIDHQKTH
fgenesh2_pg.scaffold_407000006
C2H2 ZF
599
621
FKCDQCDYSALDKSKLKQHEVKH
fgenesh2_pg.scaffold_407000006
C2H2 ZF
627
649
YMCGECGYGTAYRSHLSRHMRTH
fgenesh2_pg.scaffold_407000006
C2H2 ZF
655
677
YKCDQCYYSAAEKHHLIDHQTRH
fgenesh2_pg.scaffold_407000006
C2H2 ZF
683
705
YMCGECGFRTAHRSTLSIHMRTH
fgenesh2_pg.scaffold_407000006
C2H2 ZF
711
733
YKCDQCDYSAADKSSLNRHVSTH
Links
Other
C2H2 ZF
family TFs
Other
Branchiostoma floridae
TFs
0 Related TFs
">No related TF found