CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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fgenesh2_pg.scaffold_55000017
(
Branchiostoma floridae
)
C2H2 ZF
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00096 (zf-C2H2)
IPR007087
fgenesh2_pg.scaffold_55000017
T139582_2.00
JGI (2012-Mar-17)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No TFs with similar DNA binding domains
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
fgenesh2_pg.scaffold_55000017
C2H2 ZF
52
73
YMCGGCGYRTAWQSSLSRHMLT
fgenesh2_pg.scaffold_55000017
C2H2 ZF
80
102
YKCHKCEYSTAKKCQLDYHLAKH
fgenesh2_pg.scaffold_55000017
C2H2 ZF
108
130
YLCGECGYRTAQKSNLSQHMRTH
fgenesh2_pg.scaffold_55000017
C2H2 ZF
136
158
YKCDQCDYSTARRCYLDQHLAKH
fgenesh2_pg.scaffold_55000017
C2H2 ZF
164
186
YMCGECGYRTVRKSNLYIHMRTH
fgenesh2_pg.scaffold_55000017
C2H2 ZF
227
249
YRCEECSRQFGVLGALKKHMRTH
fgenesh2_pg.scaffold_55000017
C2H2 ZF
255
277
YRCEECNRRFSRSAHLKLHLQTH
fgenesh2_pg.scaffold_55000017
C2H2 ZF
283
305
YNCEECSKQFRQLSNLKSHMRTH
fgenesh2_pg.scaffold_55000017
C2H2 ZF
311
333
YRCEECSKKCSQLSHLKAHMRTH
fgenesh2_pg.scaffold_55000017
C2H2 ZF
339
361
YKCEECSKQFGLLGTLKTHMRTH
fgenesh2_pg.scaffold_55000017
C2H2 ZF
367
389
YRCEECSKQFRQQGDLKKHMQTH
fgenesh2_pg.scaffold_55000017
C2H2 ZF
395
417
YKCEECSKQFGLQGNLKTHMRTH
fgenesh2_pg.scaffold_55000017
C2H2 ZF
423
445
YKCEGCGKQSSTLSNLKSHMKTH
Links
Other
C2H2 ZF
family TFs
Other
Branchiostoma floridae
TFs
0 Related TFs
">No related TF found