CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
Home
Tools
View cart
Bulk downloads
Database stats
Contact us
Help
Update Log
FAQ
Links
How to cite
fgenesh2_pg.scaffold_573000007
(
Branchiostoma floridae
)
C2H2 ZF
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00096 (zf-C2H2)
IPR007087
fgenesh2_pg.scaffold_573000007
T139590_2.00
JGI (2012-Mar-17)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No TFs with similar DNA binding domains
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
fgenesh2_pg.scaffold_573000007
C2H2 ZF
10
32
YKCEECGYRTAQNYTLSKHMRTH
fgenesh2_pg.scaffold_573000007
C2H2 ZF
38
60
YKCDQCDYSATQKSSLDLHLTKH
fgenesh2_pg.scaffold_573000007
C2H2 ZF
66
88
YMCGECGFSTTLKSTLSRHMRTH
fgenesh2_pg.scaffold_573000007
C2H2 ZF
94
116
YKCHLCDYSAAQKTPLDVHLRKH
fgenesh2_pg.scaffold_573000007
C2H2 ZF
122
144
YMCGECGFRTAQKSTLSKHIITH
fgenesh2_pg.scaffold_573000007
C2H2 ZF
150
172
YKCKECGYKTAYKSDLSKHMRNH
fgenesh2_pg.scaffold_573000007
C2H2 ZF
206
228
YMCGECGYRTARKDTLSEHMRTH
fgenesh2_pg.scaffold_573000007
C2H2 ZF
246
268
YKCDQCDYSAARKSTLDDHMIKH
fgenesh2_pg.scaffold_573000007
C2H2 ZF
274
296
YMCGECGFRTARKSDLSKHMRIH
fgenesh2_pg.scaffold_573000007
C2H2 ZF
302
324
YKCDQCDYSAAQKSHLDQHLTKH
fgenesh2_pg.scaffold_573000007
C2H2 ZF
330
352
YMCGECGYRTSRKSYLSQHMKTH
fgenesh2_pg.scaffold_573000007
C2H2 ZF
442
464
YMCGECGYRAAQKINLTVHMRMH
fgenesh2_pg.scaffold_573000007
C2H2 ZF
470
493
YKCDQCDYSAAHKSSLYKHRLAKH
fgenesh2_pg.scaffold_573000007
C2H2 ZF
499
521
YLCGECGYRTADRSTLSRHMRTH
fgenesh2_pg.scaffold_573000007
C2H2 ZF
527
549
YKCDQCDYSAAEKFALVQHLTKH
fgenesh2_pg.scaffold_573000007
C2H2 ZF
555
577
YMCGECGLRTAWKSTLLRHMRTH
fgenesh2_pg.scaffold_573000007
C2H2 ZF
583
605
YRCDQCDYSAAEKSTLDDHITKH
fgenesh2_pg.scaffold_573000007
C2H2 ZF
611
633
YMCGECGYRTALRANLSRHMKTH
fgenesh2_pg.scaffold_573000007
C2H2 ZF
639
661
YKCDQCNYSAARKSALSFHVKRH
fgenesh2_pg.scaffold_573000007
C2H2 ZF
667
689
YKCDHCDYSTTQKSSFDIHLARH
fgenesh2_pg.scaffold_573000007
C2H2 ZF
695
717
YKCDQCDYSAARKSHLDLHLARH
fgenesh2_pg.scaffold_573000007
C2H2 ZF
723
745
YMCDECGYRAAHKSNLSRHMKTH
fgenesh2_pg.scaffold_573000007
C2H2 ZF
751
773
FKCDQCDYSATRKSTLYQHVEKH
fgenesh2_pg.scaffold_573000007
C2H2 ZF
779
801
YMCGECGYRTNQKSTLSIHMRSH
fgenesh2_pg.scaffold_573000007
C2H2 ZF
807
829
YKCDQCDYSAAHKSSLDQHLAKH
fgenesh2_pg.scaffold_573000007
C2H2 ZF
835
857
YMCGECGYRTTHKSALSKHMRTH
fgenesh2_pg.scaffold_573000007
C2H2 ZF
863
885
YKCDQCDYSAAQKSHLDYHLTKH
fgenesh2_pg.scaffold_573000007
C2H2 ZF
891
913
YNCGECGYRTTHKSALSKHMRTH
fgenesh2_pg.scaffold_573000007
C2H2 ZF
919
941
YKCDQCDYSAAQKSNLDNHLVKH
fgenesh2_pg.scaffold_573000007
C2H2 ZF
947
969
YMCGECGFRSAGRSTLSRHMKTH
fgenesh2_pg.scaffold_573000007
C2H2 ZF
998
1020
YKCDQCDYATAQKFNLHQHLTKH
fgenesh2_pg.scaffold_573000007
C2H2 ZF
1026
1048
YMCGECGHRTAHKFDLSVHMRTH
fgenesh2_pg.scaffold_573000007
C2H2 ZF
1054
1076
YKCDQCDYSAAVKSNLNKHLAKH
fgenesh2_pg.scaffold_573000007
C2H2 ZF
1082
1104
YMCGECGYRAAQESTLSEHMQTH
Links
Other
C2H2 ZF
family TFs
Other
Branchiostoma floridae
TFs
0 Related TFs
">No related TF found