CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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fgenesh2_pm.scaffold_199000004
(
Branchiostoma floridae
)
C2H2 ZF
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00096 (zf-C2H2)
IPR007087
fgenesh2_pm.scaffold_199000004
T139771_2.00
JGI (2012-Mar-17)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No TFs with similar DNA binding domains
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
fgenesh2_pm.scaffold_199000004
C2H2 ZF
10
32
YACDQCDYRAAQRGGMDAHMETH
fgenesh2_pm.scaffold_199000004
C2H2 ZF
38
60
YMCGECGHRTDRKSAMDNHMRVH
fgenesh2_pm.scaffold_199000004
C2H2 ZF
66
88
FDCEDCDFSATHKGDLERHMETH
fgenesh2_pm.scaffold_199000004
C2H2 ZF
134
150
EKITQQSYHLNTHMKTH
fgenesh2_pm.scaffold_199000004
C2H2 ZF
157
178
MCGECGYRAANKTAMDKHVRIH
fgenesh2_pm.scaffold_199000004
C2H2 ZF
184
206
YACRQCDYRATQKGSLEYHMRTH
fgenesh2_pm.scaffold_199000004
C2H2 ZF
212
239
FVCEECGYRAALKGNLDKHVMKIHRRTH
fgenesh2_pm.scaffold_199000004
C2H2 ZF
245
267
FACGQCDYRTAEKDSLDRHMKTH
fgenesh2_pm.scaffold_199000004
C2H2 ZF
273
296
FACVECGYRAAFKGNLHKHVLTIH
fgenesh2_pm.scaffold_199000004
C2H2 ZF
350
372
FKCEQCDFSSAWKGSLKTHMKTH
fgenesh2_pm.scaffold_199000004
C2H2 ZF
378
400
FKCGECGYKTARKYHLKRHTETH
fgenesh2_pm.scaffold_199000004
C2H2 ZF
408
430
FHCGHCDYKAAKRDTLERHMTTH
fgenesh2_pm.scaffold_199000004
C2H2 ZF
436
458
YACDKCDYRAAQQATLKQHQETH
Links
Other
C2H2 ZF
family TFs
Other
Branchiostoma floridae
TFs
0 Related TFs
">No related TF found