CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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fgenesh2_pm.scaffold_418000005
(
Branchiostoma floridae
)
C2H2 ZF
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00096 (zf-C2H2)
IPR007087
fgenesh2_pm.scaffold_418000005
T139823_2.00
JGI (2012-Mar-17)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No TFs with similar DNA binding domains
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
fgenesh2_pm.scaffold_418000005
C2H2 ZF
1
22
MCGECGYRTAQKSHLSRHMRTH
fgenesh2_pm.scaffold_418000005
C2H2 ZF
28
50
YKCDQCDYSAAHKNSLDQHLAKH
fgenesh2_pm.scaffold_418000005
C2H2 ZF
56
78
YMCEECGYRTAHKSTLSRHMRTH
fgenesh2_pm.scaffold_418000005
C2H2 ZF
84
106
YKCDQCDFSAALKSTLDRHLAIH
fgenesh2_pm.scaffold_418000005
C2H2 ZF
112
134
YMCGECGYRTTQKSHLARHMRTH
fgenesh2_pm.scaffold_418000005
C2H2 ZF
140
162
YKCNQCDYSAALKSTLDQHLAIH
fgenesh2_pm.scaffold_418000005
C2H2 ZF
168
190
YMCGECGYRTAQKYHLSQHMRTH
fgenesh2_pm.scaffold_418000005
C2H2 ZF
196
218
YKCNQCDYSAALKSTLDQHLAIH
fgenesh2_pm.scaffold_418000005
C2H2 ZF
237
259
YMCGECGYRTTQKSHLAQHMRTH
fgenesh2_pm.scaffold_418000005
C2H2 ZF
265
287
YKCDQCDYSAAHKSTLNQHLARH
fgenesh2_pm.scaffold_418000005
C2H2 ZF
293
315
YMCGQCGYRTTRKSQLSKHMRTH
Links
Other
C2H2 ZF
family TFs
Other
Branchiostoma floridae
TFs
0 Related TFs
">No related TF found