CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
Home
Tools
View cart
Bulk downloads
Database stats
Contact us
Help
Update Log
FAQ
Links
How to cite
fgenesh2_pm.scaffold_48000005
(
Branchiostoma floridae
)
C2H2 ZF
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00096 (zf-C2H2)
IPR007087
fgenesh2_pm.scaffold_48000005
T139830_2.00
JGI (2012-Mar-17)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No TFs with similar DNA binding domains
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
fgenesh2_pm.scaffold_48000005
C2H2 ZF
10
32
FMCGECGYRARHKYRLVEHMRKH
fgenesh2_pm.scaffold_48000005
C2H2 ZF
38
60
FKCDQCNYNASYKTLLVKHMKSH
fgenesh2_pm.scaffold_48000005
C2H2 ZF
66
88
YSCDICEYQTYIKSNVERHMMCH
fgenesh2_pm.scaffold_48000005
C2H2 ZF
94
117
YKCEECDFRAVGKSYLVKHRRRRH
fgenesh2_pm.scaffold_48000005
C2H2 ZF
137
159
YSCEICDHKAYIKANFETHMMRH
fgenesh2_pm.scaffold_48000005
C2H2 ZF
165
187
YKCEECDYSTAHKSDLIKHRRRH
fgenesh2_pm.scaffold_48000005
C2H2 ZF
213
235
YVCDVCGFKTSTAHRLSQHRKRH
fgenesh2_pm.scaffold_48000005
C2H2 ZF
241
263
FMCGECGFRACHKYRLVRHMRTH
fgenesh2_pm.scaffold_48000005
C2H2 ZF
269
291
FKCNQCNYKTSHERYLVEHMKTH
fgenesh2_pm.scaffold_48000005
C2H2 ZF
297
319
YRCEICDYQTYKKSHFEKHMMCH
fgenesh2_pm.scaffold_48000005
C2H2 ZF
325
347
YKCEECDYRTAYNPDLTRHRRRH
fgenesh2_pm.scaffold_48000005
C2H2 ZF
353
376
YSCQECDYKAKEKGKLNRHMRFKH
Links
Other
C2H2 ZF
family TFs
Other
Branchiostoma floridae
TFs
0 Related TFs
">No related TF found