CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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gw.407.12.1
(
Branchiostoma floridae
)
C2H2 ZF
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00096 (zf-C2H2)
IPR007087
gw.407.12.1
T140176_2.00
JGI (2012-Mar-17)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No TFs with similar DNA binding domains
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
gw.407.12.1
C2H2 ZF
9
31
YRCEKCGYRTADESTLSQHMKVH
gw.407.12.1
C2H2 ZF
38
60
YMCGECGYRARDKSQLSRHMIIH
gw.407.12.1
C2H2 ZF
94
116
YMCGECGYRSSFKSGLYRHMKRH
gw.407.12.1
C2H2 ZF
122
145
HKCEHCDYSTADKCSLDQHVLVKH
gw.407.12.1
C2H2 ZF
151
173
YMCGECGYRTAWKYGLTQHERTH
gw.407.12.1
C2H2 ZF
180
202
YKCDQCDKAYTNKSALNQHYKKH
gw.407.12.1
C2H2 ZF
208
230
YMCEKCDYRTTQKSLLTIHVRTH
gw.407.12.1
C2H2 ZF
236
259
YKCDQCDYFAASNSTLRQHLISKH
gw.407.12.1
C2H2 ZF
265
287
YMCGECGYRTTNKATLSIHMRIH
gw.407.12.1
C2H2 ZF
293
315
YKCDQCDYTAAWKTALKQHRAKH
gw.407.12.1
C2H2 ZF
321
343
FVCGECGYRTAYNMTLARHMRTH
gw.407.12.1
C2H2 ZF
349
371
YKCDQCDYSAAQKYDLENHRIIH
gw.407.12.1
C2H2 ZF
377
399
YMCSVCGFMTAHKSNLAKHMRTH
gw.407.12.1
C2H2 ZF
405
427
YKCDHCDYAAALKSALNQHQAKH
gw.407.12.1
C2H2 ZF
433
455
FLCNKCGFRTTRKSHLTRHMMTH
gw.407.12.1
C2H2 ZF
461
483
YKCDQCDYSAALKSHLDQHLTKH
gw.407.12.1
C2H2 ZF
489
511
FMCDKCGYRTAYQSDFSRHMRTH
gw.407.12.1
C2H2 ZF
547
569
FYCDQCDYSAAQKDSLDKHLAKH
Links
Other
C2H2 ZF
family TFs
Other
Branchiostoma floridae
TFs
0 Related TFs
">No related TF found