CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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AT1G76870
(
Arabidopsis thaliana
)
Unknown
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
Unknown
Unknown
AT1G76870
T350181_2.00
Ensembl (2018-Dec-8)
Link out
NCBI Gene Info:
Encodes a SWI/SNF chromatin remodeling ATPase that upregulates transcription of all three CUC genes and is involved in the formation and/or maintenance of boundary cells during embryogenesis. Also mediates repression of expression of seed storage proteins in vegetative tissues. Interacts strongly with AtSWI3C, also with AtSWI3B, but not with AtSWI3A or AtSWI3D.
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
AT1G76870
M07319_2.00
Arabidopsis thaliana
HNNNWAAACCRSHW
WDSYGGTTTWNNND
Dap-seq
OMalley et al.(2016)
AT1G76870_col_b
(Direct)
(Direct)
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
For this family, TFs with SR scores >
0.700
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
AT1G76870.1
Unknown
1
385
MEGNCSQGRFDSQVSSMRDLRPNAINQNQKQHHPNSRQDSGFNNTMDTRHNNVDRGKKSMSEDDELCLLSSDGQNKSKENSPWQRVKWMDKMVKLMITALSYIGEDSGSDKKFAVLQKKGKWRSVSKVMDERGYHVSPQQCEDKFNDLNKRYKKLNEMLGRGTSCEVVENPSLLDKIDYLNEKEKDEVRRIMSSKHLFYEEMCSYHNGNRLHLPHDPAVQRSLHLITLGSRDDHDNDEHGKHQNEDLDDDDDYEEDHDGALSDRPLKRLRQSQSHEDVGHPNKGYDVPCLPRSQADVNRGISLDSRKAAGLQRQQIESKSLELEGRKLQIQAEMMELERQQFKWEVFSKRREQKLAKMRMENERMKLENERMSLELKRIELGAKL
Links
Other
Unknown
family TFs
Other
Arabidopsis thaliana
TFs
0 Related TFs
">No related TF found