Bra024222 (Brassica rapa)
AP2

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00847 (AP2) IPR001471 Bra024222 T001158_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
ERF054
M06647_2.00 		Arabidopsis thaliana
NNNNNNNNNHHDSCRCCGHC
GDCGGYGSHDDNNNNNNNNN		 Dap-seq
OMalley et al.(2016)
At4g28140_col_a 		0.811 0.980
ERF054
M06648_2.00 		Arabidopsis thaliana
NNNNHDBCRCCGHCM
KGDCGGYGVHDNNNN		 Dap-seq
OMalley et al.(2016)
At4g28140_colamp_a 		0.811 0.980
AT5G65130
M06686_2.00 		Arabidopsis thaliana
YCDYCDCCRCCGCCN
NGGCGGYGGHGRHGR		 Dap-seq
OMalley et al.(2016)
At5g65130_col_a 		0.682 0.740
AT5G65130
M06687_2.00 		Arabidopsis thaliana
NNNNHNNHDSCRCCGMCMW
WKGKCGGYGSHDNNDNNNN		 Dap-seq
OMalley et al.(2016)
At5g65130_colamp_a 		0.682 0.740
ERF055
M06577_2.00 		Arabidopsis thaliana
NHDYCACCGHCMHH
DDKGDCGGTGRHDN		 Dap-seq
OMalley et al.(2016)
At1g36060_col_a 		0.680 0.840
ERF055
M06578_2.00 		Arabidopsis thaliana
NHDYCACCGHCMHH
DDKGDCGGTGRHDN		 Dap-seq
OMalley et al.(2016)
At1g36060_colamp_a 		0.680 0.840
For this family, TFs with SR scores > 0.677 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Bra024222.1-P AP2 75 126

Links

Other AP2 family TFs
Other Brassica rapa TFs

36 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
POGK Bos taurus ENSBTAG00000010775 N
ENSBTAP00000046628-D1 Bos grunniens ENSBTAP00000046628-D1 N
POGK Canis familiaris ENSCAFG00000015613 N
POGK Choloepus hoffmanni ENSCHOG00000003466 N
ENSCJAG00000033914 Callithrix jacchus ENSCJAG00000033914 I
POGK Cavia porcellus ENSCPOG00000026820 N
ENSCSAG00000010784 Chlorocebus sabaeus ENSCSAG00000010784 N
POGK Dasypus novemcinctus ENSDNOG00000035171 N
ENSDORG00000006822 Dipodomys ordii ENSDORG00000006822 N
POGK Equus caballus ENSECAG00000003013 N
ENSEEUG00000004133 Erinaceus europaeus ENSEEUG00000004133 N
ENSEEUG00000014393 Erinaceus europaeus ENSEEUG00000014393 N
POGK Echinops telfairi ENSETEG00000010593 N
POGK Felis catus ENSFCAG00000010534 N
POGK Homo sapiens ENSG00000143157 I
POGK Gorilla gorilla ENSGGOG00000008163 N
ENSMEUG00000000171 Macropus eugenii ENSMEUG00000000171 N
POGK Microcebus murinus ENSMICG00000011758 N
ENSMLUG00000014832 Myotis lucifugus ENSMLUG00000014832 N
POGK Macaca mulatta ENSMMUG00000017789 N
POGK Monodelphis domestica ENSMODG00000001618 N
ENSMPUG00000015689 Mustela putorius furo ENSMPUG00000015689 N
Pogk Mus musculus ENSMUSG00000040596 N
ENSNLEG00000014756 Nomascus leucogenys ENSNLEG00000014756 N
ENSOARG00000011793 Ovis aries ENSOARG00000011793 N
POGK Oryctolagus cuniculus ENSOCUG00000028218 N
POGK Otolemur garnettii ENSOGAG00000007615 N
POGK Ochotona princeps ENSOPRG00000010382 N
ENSP00000356849 Macaca fascicularis ENSP00000356849 N
ENSPANG00000013790 Papio anubis ENSPANG00000013790 N
POGK Procavia capensis ENSPCAG00000003826 N
ENSPPYG00000000558 Pongo abelii ENSPPYG00000000558 N
POGK Pan troglodytes ENSPTRG00000001626 N
POGK Pteropus vampyrus ENSPVAG00000014118 N
Pogk Rattus norvegicus ENSRNOG00000032058 N
ENSSHAG00000018112 Sarcophilus harrisii ENSSHAG00000018112 N
POGK Sus scrofa ENSSSCG00000006319 N
ENSSTOG00000025009 Ictidomys tridecemlineatus ENSSTOG00000025009 N
POGK Tupaia belangeri ENSTBEG00000012681 N
ENSTSYG00000011078 Tarsius syrichta ENSTSYG00000011078 N
POGK Tursiops truncatus ENSTTRG00000015778 N
Myotis_brandtii_POGK_10024358 Myotis brandtii Myotis_brandtii_POGK_10024358 N