AT5G65130 (Arabidopsis thaliana)
AP2

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00847 (AP2) IPR001471 AT5G65130 T000535_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
AT5G65130
M06686_2.00		 Arabidopsis thaliana
YCDYCDCCRCCGCCN
NGGCGGYGGHGRHGR		 Dap-seq
OMalley et al.(2016)
At5g65130_col_a		 (Direct) (Direct)
AT5G65130
M06687_2.00		 Arabidopsis thaliana
NNNNHNNHDSCRCCGMCMW
WKGKCGGYGSHDNNDNNNN		 Dap-seq
OMalley et al.(2016)
At5g65130_colamp_a		 (Direct) (Direct)

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
RAP2-4
M01612_2.00 		Arabidopsis thaliana
NRCCGHCMNN
NNKGDCGGYN		 PBM
Weirauch et al.(2014)
pTH8092 		0.721 0.860
ERF055
M06577_2.00 		Arabidopsis thaliana
NHDYCACCGHCMHH
DDKGDCGGTGRHDN		 Dap-seq
OMalley et al.(2016)
At1g36060_col_a 		0.711 0.860
ERF055
M06578_2.00 		Arabidopsis thaliana
NHDYCACCGHCMHH
DDKGDCGGTGRHDN		 Dap-seq
OMalley et al.(2016)
At1g36060_colamp_a 		0.711 0.860
ERF054
M06647_2.00 		Arabidopsis thaliana
NNNNNNNNNHHDSCRCCGHC
GDCGGYGSHDDNNNNNNNNN		 Dap-seq
OMalley et al.(2016)
At4g28140_col_a 		0.702 0.760
ERF054
M06648_2.00 		Arabidopsis thaliana
NNNNHDBCRCCGHCM
KGDCGGYGVHDNNNN		 Dap-seq
OMalley et al.(2016)
At4g28140_colamp_a 		0.702 0.760
For this family, TFs with SR scores > 0.677 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
AT5G65130.1 AP2 109 160
AT5G65130.2 AP2 111 162

Links

Other AP2 family TFs
Other Arabidopsis thaliana TFs

258 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
scaffold_803239.1 Arabidopsis lyrata scaffold_803239.1 I 0.831
Bostr.0568s0279 Boechera stricta Bostr.0568s0279 I 0.792
Cagra.0917s0073 Capsella grandiflora Cagra.0917s0073 I 0.792
Carubv10026925m.g Capsella rubella Carubv10026925m.g I 0.792
Bo3g100470 Brassica oleracea Bo3g100470 I 0.762
Bo00790s010 Brassica oleracea Bo00790s010 I 0.756
Bra024358 Brassica rapa Bra024358 I 0.756
Thhalv10005326m.g Eutrema salsugineum Thhalv10005326m.g I 0.752
Bra024357 Brassica rapa Bra024357 I 0.747
mgf012639m Mimulus guttatus mgf012639m I 0.741
VIT_19s0014g03180 Vitis vinifera VIT_19s0014g03180 I 0.738
gene16350-v1.0-hybrid Fragaria vesca gene16350-v1.0-hybrid I 0.731
SELMODRAFT_104980 Selaginella moellendorffii SELMODRAFT_104980 I 0.730
Cucsa.104510 Cucumis sativus Cucsa.104510 I 0.730
Lus10016801.g Linum usitatissimum Lus10016801.g I 0.730
Ciclev10025961m.g Citrus clementina Ciclev10025961m.g I 0.726
orange1.1g018103m.g Citrus sinensis orange1.1g018103m.g I 0.726
Bo7g119000 Brassica oleracea Bo7g119000 I 0.723
Bra017879 Brassica rapa Bra017879 I 0.723
Ca_23799 Cicer arietinum Ca_23799 I 0.723
Eucgr.I00422 Eucalyptus grandis Eucgr.I00422 I 0.723
Eucgr.L03532 Eucalyptus grandis Eucgr.L03532 I 0.723
Thhalv10025958m.g Eutrema salsugineum Thhalv10025958m.g I 0.723
chr2.CM0608.10.nd Lotus japonicus chr2.CM0608.10.nd I 0.723
chr5.CM0909.290.nc Lotus japonicus chr5.CM0909.290.nc I 0.723
BGIOSGA030624 Oryza indica BGIOSGA030624 I 0.722
BRADI4G29010 Brachypodium distachyon BRADI4G29010 I 0.722
GRMZM2G141679 Zea mays GRMZM2G141679 I 0.722
LPERR09G05410 Leersia perrieri LPERR09G05410 I 0.722
OB09G15200 Oryza brachyantha OB09G15200 I 0.722
OGLUM09G08150 Oryza glumaepatula OGLUM09G08150 I 0.722
OMERI09G06210 Oryza meridionalis OMERI09G06210 I 0.722
OMERI09G06220 Oryza meridionalis OMERI09G06220 I 0.722
ONIVA09G06980 Oryza nivara ONIVA09G06980 I 0.722
OPUNC09G06680 Oryza punctata OPUNC09G06680 I 0.722
ORGLA09G0057100 Oryza glaberrima ORGLA09G0057100 I 0.722
ORUFI09G08380 Oryza rufipogon ORUFI09G08380 I 0.722
Sb02g023230 Sorghum bicolor Sb02g023230 I 0.722
Sb07g020090 Sorghum bicolor Sb07g020090 I 0.722
Si030684m.g Setaria italica Si030684m.g I 0.722
Traes_5BL_4D65B66E2 Triticum aestivum Traes_5BL_4D65B66E2 I 0.722
Pavir.Ba02199 Panicum virgatum Pavir.Ba02199 I 0.722
Pavir.Bb01980 Panicum virgatum Pavir.Bb01980 I 0.722
Pavir.Fa01600 Panicum virgatum Pavir.Fa01600 I 0.722
Pavir.Fb01192 Panicum virgatum Pavir.Fb01192 I 0.722
Pavir.J25956 Panicum virgatum Pavir.J25956 I 0.722
AMTR_s00009p00268560 Amborella trichopoda AMTR_s00009p00268560 I 0.721
AMTR_s00010p00194910 Amborella trichopoda AMTR_s00010p00194910 I 0.721
RAP2-13 Arabidopsis thaliana AT1G22190 I 0.721
RAP2-4 Arabidopsis thaliana AT1G78080 D 0.721
Bo5g037400 Brassica oleracea Bo5g037400 I 0.721
Bo6g121730 Brassica oleracea Bo6g121730 I 0.721
Bra008343 Brassica rapa Bra008343 I 0.721
Bra015634 Brassica rapa Bra015634 I 0.721
Bra031371 Brassica rapa Bra031371 I 0.721
fgenesh2_kg.1__2408__AT1G22190.1 Arabidopsis lyrata fgenesh2_kg.1__2408__AT1G22190.1 I 0.721
RAP2.4 Arabidopsis lyrata fgenesh2_kg.2__2105__AT1G78080.1 I 0.721
GLYMA04G11290 Glycine max GLYMA04G11290 I 0.721
GLYMA06G11010 Glycine max GLYMA06G11010 I 0.721
GSMUA_Achr10G30440_001 Musa acuminata GSMUA_Achr10G30440_001 I 0.721
GSMUA_AchrUn_randomG20840_001 Musa acuminata GSMUA_AchrUn_randomG20840_001 I 0.721
MTR_3g074130 Medicago truncatula MTR_3g074130 I 0.721
POPTR_0002s09480 Populus trichocarpa POPTR_0002s09480 I 0.721
POPTR_0005s16690 Populus trichocarpa POPTR_0005s16690 I 0.721
PRUPE_ppa007193mg Prunus persica PRUPE_ppa007193mg I 0.721
PRUPE_ppa008234mg Prunus persica PRUPE_ppa008234mg I 0.721
PRUPE_ppa020676mg Prunus persica PRUPE_ppa020676mg I 0.721
TCM_034939 Theobroma cacao TCM_034939 I 0.721
VIT_18s0001g05250 Vitis vinifera VIT_18s0001g05250 I 0.721
Cla014376 Citrullus lanatus Cla014376 I 0.721
Cla022420 Citrullus lanatus Cla022420 I 0.721
Pm002052 Prunus mume Pm002052 I 0.721
Pm004824 Prunus mume Pm004824 I 0.721
29908.m006005 Ricinus communis 29908.m006005 I 0.721
cassava10153.m1 Manihot esculenta cassava10153.m1 I 0.721
Cucsa.154520 Cucumis sativus Cucsa.154520 I 0.721
mgf002388m Mimulus guttatus mgf002388m I 0.721
Aquca_014_00592 Aquilegia coerulea Aquca_014_00592 I 0.721
Bostr.12659s0070 Boechera stricta Bostr.12659s0070 I 0.721
Bostr.20129s0241 Boechera stricta Bostr.20129s0241 I 0.721
Cagra.0096s0029 Capsella grandiflora Cagra.0096s0029 I 0.721
Carubv10020567m.g Capsella rubella Carubv10020567m.g I 0.721
Ciclev10001563m.g Citrus clementina Ciclev10001563m.g I 0.721
Eucgr.F02440 Eucalyptus grandis Eucgr.F02440 I 0.721
evm.TU.supercontig_36.112 Carica papaya evm.TU.supercontig_36.112 I 0.721
evm.TU.supercontig_996.1 Carica papaya evm.TU.supercontig_996.1 I 0.721
gene22114-v1.0-hybrid Fragaria vesca gene22114-v1.0-hybrid I 0.721
Gorai.009G238800 Gossypium raimondii Gorai.009G238800 I 0.721
Gorai.010G043200 Gossypium raimondii Gorai.010G043200 I 0.721
Lus10020913.g Linum usitatissimum Lus10020913.g I 0.721
Lus10033463.g Linum usitatissimum Lus10033463.g I 0.721
MDP0000313476 Malus domestica MDP0000313476 I 0.721
orange1.1g017798m.g Citrus sinensis orange1.1g017798m.g I 0.721
SapurV1A.0010s0170 Salix purpurea SapurV1A.0010s0170 I 0.721
Thhalv10008326m.g Eutrema salsugineum Thhalv10008326m.g I 0.721
Thhalv10018771m.g Eutrema salsugineum Thhalv10018771m.g I 0.721
PK27482.1 Cannabis sativa PK27482.1 I 0.721
LjSGA_026196.1 Lotus japonicus LjSGA_026196.1 I 0.721
BGIOSGA028650 Oryza indica BGIOSGA028650 I 0.720
LPERR08G11750 Leersia perrieri LPERR08G11750 I 0.720
OBART08G14280 Oryza barthii OBART08G14280 I 0.720
OGLUM08G15030 Oryza glumaepatula OGLUM08G15030 I 0.720
ONIVA08G15160 Oryza nivara ONIVA08G15160 I 0.720
OPUNC08G13450 Oryza punctata OPUNC08G13450 I 0.720
ORGLA08G0124900 Oryza glaberrima ORGLA08G0124900 I 0.720
ORUFI08G16150 Oryza rufipogon ORUFI08G16150 I 0.720
OS08G0408500 Oryza sativa OS08G0408500 I 0.720
e_gw1.335.26.1 Physcomitrella patens e_gw1.335.26.1 I 0.720
cassava36179.valid.m1 Manihot esculenta cassava36179.valid.m1 I 0.719
SapurV1A.0335s0040 Salix purpurea SapurV1A.0335s0040 I 0.719
GSMUA_Achr9G12950_001 Musa acuminata GSMUA_Achr9G12950_001 I 0.718
AMTR_s00089p00102760 Amborella trichopoda AMTR_s00089p00102760 I 0.717
Bo6g081850 Brassica oleracea Bo6g081850 I 0.717
PGSC0003DMG400008538 Solanum tuberosum PGSC0003DMG400008538 I 0.717
PGSC0003DMG400020625 Solanum tuberosum PGSC0003DMG400020625 I 0.717
POPTR_0007s05690 Populus trichocarpa POPTR_0007s05690 I 0.717
Solyc04g054910.2 Solanum lycopersicum Solyc04g054910.2 I 0.717
Solyc12g056980.1 Solanum lycopersicum Solyc12g056980.1 I 0.717
TCM_001147 Theobroma cacao TCM_001147 I 0.717
28206.m000104 Ricinus communis 28206.m000104 I 0.717
cassava23925.valid.m1 Manihot esculenta cassava23925.valid.m1 I 0.717
cassava31195.valid.m1 Manihot esculenta cassava31195.valid.m1 I 0.717
mgf023311m Mimulus guttatus mgf023311m I 0.717
Aquca_014_00591 Aquilegia coerulea Aquca_014_00591 I 0.717
Gorai.003G038200 Gossypium raimondii Gorai.003G038200 I 0.717
SapurV1A.0075s0120 Salix purpurea SapurV1A.0075s0120 I 0.717
SapurV1A.0684s0120 Salix purpurea SapurV1A.0684s0120 I 0.717
PK18885.1 Cannabis sativa PK18885.1 I 0.717
AMTR_s00107p00095070 Amborella trichopoda AMTR_s00107p00095070 I 0.716
BRADI3G35560 Brachypodium distachyon BRADI3G35560 I 0.716
SELMODRAFT_73149 Selaginella moellendorffii SELMODRAFT_73149 I 0.716
Lus10000582.g Linum usitatissimum Lus10000582.g I 0.716
Lus10019665.g Linum usitatissimum Lus10019665.g I 0.716
scaffold_400172.1 Arabidopsis lyrata scaffold_400172.1 I 0.715
Gorai.012G130600 Gossypium raimondii Gorai.012G130600 I 0.715
Lus10022497.g Linum usitatissimum Lus10022497.g I 0.715
GLYMA13G01930 Glycine max GLYMA13G01930 I 0.714
GLYMA14G34590 Glycine max GLYMA14G34590 I 0.714
MTR_5g062700 Medicago truncatula MTR_5g062700 I 0.714
Eucgr.F00497 Eucalyptus grandis Eucgr.F00497 I 0.714
Bo1g002840 Brassica oleracea Bo1g002840 I 0.713
GSMUA_Achr3G04360_001 Musa acuminata GSMUA_Achr3G04360_001 I 0.713
POPTR_0005s07900 Populus trichocarpa POPTR_0005s07900 I 0.713
e_gw1.187.17.1 Physcomitrella patens e_gw1.187.17.1 I 0.713
Pavir.J13316 Panicum virgatum Pavir.J13316 I 0.712
ERF055 Arabidopsis thaliana AT1G36060 D 0.711
Bo04101s010 Brassica oleracea Bo04101s010 I 0.711
Bo5g069450 Brassica oleracea Bo5g069450 I 0.711
Bra011833 Brassica rapa Bra011833 I 0.711
Bra040381 Brassica rapa Bra040381 I 0.711
fgenesh2_kg.1__3660__AT1G36060.1 Arabidopsis lyrata fgenesh2_kg.1__3660__AT1G36060.1 I 0.711
GSMUA_Achr10G19030_001 Musa acuminata GSMUA_Achr10G19030_001 I 0.711
Ca_16631 Cicer arietinum Ca_16631 I 0.711
Cla023489 Citrullus lanatus Cla023489 I 0.711
Cucsa.064390 Cucumis sativus Cucsa.064390 I 0.711
Bostr.20910s0012 Boechera stricta Bostr.20910s0012 I 0.711
Cagra.1707s0001 Capsella grandiflora Cagra.1707s0001 I 0.711
Carubv10009949m.g Capsella rubella Carubv10009949m.g I 0.711
Carubv10012538m.g Capsella rubella Carubv10012538m.g I 0.711
MDP0000453797 Malus domestica MDP0000453797 I 0.711
MDP0000683814 Malus domestica MDP0000683814 I 0.711
MDP0000865032 Malus domestica MDP0000865032 I 0.711
MTR_8g090350 Medicago truncatula MTR_8g090350 I 0.710
Ca_09578 Cicer arietinum Ca_09578 I 0.710
ERF060 Arabidopsis thaliana AT4G39780 I 0.708
Bo3g152610 Brassica oleracea Bo3g152610 I 0.708
fgenesh2_kg.7__195__AT4G39780.1 Arabidopsis lyrata fgenesh2_kg.7__195__AT4G39780.1 I 0.708
Bostr.25542s0167 Boechera stricta Bostr.25542s0167 I 0.708
Bra003659 Brassica rapa Bra003659 I 0.707
VIT_00s0662g00030 Vitis vinifera VIT_00s0662g00030 I 0.707
VIT_00s0662g00040 Vitis vinifera VIT_00s0662g00040 I 0.707
Gorai.008G153600 Gossypium raimondii Gorai.008G153600 I 0.707
PGSC0003DMG400009475 Solanum tuberosum PGSC0003DMG400009475 I 0.706
Solyc04g072900.1 Solanum lycopersicum Solyc04g072900.1 I 0.706
GLYMA05G31370 Glycine max GLYMA05G31370 I 0.705
GLYMA08G14600 Glycine max GLYMA08G14600 I 0.705
GLYMA18G02170 Glycine max GLYMA18G02170 I 0.705
Cagra.5414s0001 Capsella grandiflora Cagra.5414s0001 I 0.705
Carubv10007787m.g Capsella rubella Carubv10007787m.g I 0.705
Thhalv10025862m.g Eutrema salsugineum Thhalv10025862m.g I 0.703
chr4.CM0307.180.nc Lotus japonicus chr4.CM0307.180.nc I 0.703
ERF054 Arabidopsis thaliana AT4G28140 D 0.702
Bo8g054130 Brassica oleracea Bo8g054130 I 0.702
Bra010383 Brassica rapa Bra010383 I 0.702
fgenesh2_kg.7__1395__AT4G28140.1 Arabidopsis lyrata fgenesh2_kg.7__1395__AT4G28140.1 I 0.702
GRMZM2G003466 Zea mays GRMZM2G003466 I 0.702
Sb01g044410 Sorghum bicolor Sb01g044410 I 0.702
Si036827m.g Setaria italica Si036827m.g I 0.702
Bostr.5022s0013 Boechera stricta Bostr.5022s0013 I 0.702
Bostr.7867s0648 Boechera stricta Bostr.7867s0648 I 0.702
Cagra.1225s0083 Capsella grandiflora Cagra.1225s0083 I 0.702
Carubv10005203m.g Capsella rubella Carubv10005203m.g I 0.702
Eucgr.H02782 Eucalyptus grandis Eucgr.H02782 I 0.702
Gorai.008G253900 Gossypium raimondii Gorai.008G253900 I 0.702
Pavir.Ia04894 Panicum virgatum Pavir.Ia04894 I 0.702
GSMUA_Achr3G01650_001 Musa acuminata GSMUA_Achr3G01650_001 I 0.701
BRADI3G24000 Brachypodium distachyon BRADI3G24000 I 0.700
Aquca_034_00155 Aquilegia coerulea Aquca_034_00155 I 0.700
29904.m002941 Ricinus communis 29904.m002941 I 0.699
cassava27742.m1 Manihot esculenta cassava27742.m1 I 0.699
SapurV1A.1542s0030 Salix purpurea SapurV1A.1542s0030 I 0.699
SapurV1A.6751s0010 Salix purpurea SapurV1A.6751s0010 I 0.699
Gorai.005G093500 Gossypium raimondii Gorai.005G093500 I 0.698
BGIOSGA011298 Oryza indica BGIOSGA011298 I 0.697
GRMZM2G113060 Zea mays GRMZM2G113060 I 0.697
OGLUM03G06750 Oryza glumaepatula OGLUM03G06750 I 0.697
OMERI03G06570 Oryza meridionalis OMERI03G06570 I 0.697
ONIVA03G06360 Oryza nivara ONIVA03G06360 I 0.697
OPUNC03G06400 Oryza punctata OPUNC03G06400 I 0.697
ORGLA03G0064600 Oryza glaberrima ORGLA03G0064600 I 0.697
ORUFI03G06570 Oryza rufipogon ORUFI03G06570 I 0.697
OS03G0191900 Oryza sativa OS03G0191900 I 0.697
PGSC0003DMG400031294 Solanum tuberosum PGSC0003DMG400031294 I 0.697
Solyc09g091950.1 Solanum lycopersicum Solyc09g091950.1 I 0.697
Bra026280 Brassica rapa Bra026280 I 0.696
GRMZM2G039870 Zea mays GRMZM2G039870 I 0.696
Si036893m.g Setaria italica Si036893m.g I 0.696
Pm009494 Prunus mume Pm009494 I 0.695
mgf021372m Mimulus guttatus mgf021372m I 0.695
Ciclev10007069m.g Citrus clementina Ciclev10007069m.g I 0.695
Gorai.011G157500 Gossypium raimondii Gorai.011G157500 I 0.695
orange1.1g015775m.g Citrus sinensis orange1.1g015775m.g I 0.695
LPERR03G05980 Leersia perrieri LPERR03G05980 I 0.693
Bostr.7903s0066 Boechera stricta Bostr.7903s0066 I 0.693
Cagra.8551s0004 Capsella grandiflora Cagra.8551s0004 I 0.693
Carubv10014129m.g Capsella rubella Carubv10014129m.g I 0.693
Gorai.006G207800 Gossypium raimondii Gorai.006G207800 I 0.692
Traes_4AS_1E79E1072 Triticum aestivum Traes_4AS_1E79E1072 I 0.691
Traes_4BL_71E35BBC1 Triticum aestivum Traes_4BL_71E35BBC1 I 0.691
VIT_05s0029g00140 Vitis vinifera VIT_05s0029g00140 I 0.691
OBART09G07840 Oryza barthii OBART09G07840 I 0.690
TCM_020321 Theobroma cacao TCM_020321 I 0.690
gene06669-v1.0-hybrid Fragaria vesca gene06669-v1.0-hybrid I 0.690
MDP0000246184 Malus domestica MDP0000246184 I 0.690
Bo1g051230 Brassica oleracea Bo1g051230 I 0.689
GRMZM2G061487 Zea mays GRMZM2G061487 I 0.689
GRMZM2G100982 Zea mays GRMZM2G100982 I 0.687
GRMZM5G846057 Zea mays GRMZM5G846057 I 0.687
Pavir.Ia02495 Panicum virgatum Pavir.Ia02495 I 0.687
Pavir.Ib02920 Panicum virgatum Pavir.Ib02920 I 0.687
SELMODRAFT_15839 Selaginella moellendorffii SELMODRAFT_15839 I 0.686
Cla003007 Citrullus lanatus Cla003007 I 0.686
Cucsa.193930 Cucumis sativus Cucsa.193930 I 0.686
mgf016403m Mimulus guttatus mgf016403m I 0.686
Lus10016669.g Linum usitatissimum Lus10016669.g I 0.686
PGSC0003DMG400018352 Solanum tuberosum PGSC0003DMG400018352 I 0.685
PRUPE_ppa010345mg Prunus persica PRUPE_ppa010345mg I 0.685
Solyc07g054220.1 Solanum lycopersicum Solyc07g054220.1 I 0.685
mgf022495m Mimulus guttatus mgf022495m I 0.684
Lus10007124.g Linum usitatissimum Lus10007124.g I 0.683
Bo7g111910 Brassica oleracea Bo7g111910 I 0.682
Bra024222 Brassica rapa Bra024222 I 0.682
BRADI1G71740 Brachypodium distachyon BRADI1G71740 I 0.681
Bra031880 Brassica rapa Bra031880 I 0.679
LPERR06G07210 Leersia perrieri LPERR06G07210 I 0.679
cassava14392.m1 Manihot esculenta cassava14392.m1 I 0.679
GSMUA_Achr4G26080_001 Musa acuminata GSMUA_Achr4G26080_001 I 0.678