Gorai.008G253900 (Gossypium raimondii)
AP2

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00847 (AP2) IPR001471 Gorai.008G253900 T008632_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
AT5G65130
M06686_2.00 		Arabidopsis thaliana
YCDYCDCCRCCGCCN
NGGCGGYGGHGRHGR		 Dap-seq
OMalley et al.(2016)
At5g65130_col_a 		0.702 0.780
AT5G65130
M06687_2.00 		Arabidopsis thaliana
NNNNHNNHDSCRCCGMCMW
WKGKCGGYGSHDNNDNNNN		 Dap-seq
OMalley et al.(2016)
At5g65130_colamp_a 		0.702 0.780
For this family, TFs with SR scores > 0.677 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Gorai.008G253900.1 AP2 105 156

Links

Other AP2 family TFs
Other Gossypium raimondii TFs

71 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Gorai.006G207800 Gossypium raimondii Gorai.006G207800 I 0.820
BRADI2G15847 Brachypodium distachyon BRADI2G15847 N 0.791
Sb09g029070 Sorghum bicolor Sb09g029070 N 0.791
BGIOSGA017525 Oryza indica BGIOSGA017525 N 0.785
LPERR05G22130 Leersia perrieri LPERR05G22130 N 0.785
MLOC_53577 Hordeum vulgare MLOC_53577 N 0.785
OGLUM05G28130 Oryza glumaepatula OGLUM05G28130 N 0.785
ONIVA05G28560 Oryza nivara ONIVA05G28560 N 0.785
OPUNC05G24070 Oryza punctata OPUNC05G24070 N 0.785
ORGLA03G0412600 Oryza glaberrima ORGLA03G0412600 N 0.785
ORGLA05G0229700 Oryza glaberrima ORGLA05G0229700 N 0.785
ORUFI05G28440 Oryza rufipogon ORUFI05G28440 N 0.785
OS05G0572000 Oryza sativa OS05G0572000 N 0.785
Pavir.J01332 Panicum virgatum Pavir.J01332 N 0.785
Pavir.J10163 Panicum virgatum Pavir.J10163 N 0.785
GRMZM2G100982 Zea mays GRMZM2G100982 I 0.775
GRMZM5G846057 Zea mays GRMZM5G846057 I 0.775
mgf016403m Mimulus guttatus mgf016403m I 0.758
evm.TU.supercontig_79.43 Carica papaya evm.TU.supercontig_79.43 I 0.754
Gorai.007G026200 Gossypium raimondii Gorai.007G026200 N 0.754
GSMUA_Achr1G27990_001 Musa acuminata GSMUA_Achr1G27990_001 N 0.730
Bo9g030900 Brassica oleracea Bo9g030900 I 0.708
Bra027697 Brassica rapa Bra027697 I 0.708
MTR_5g009410 Medicago truncatula MTR_5g009410 I 0.708
PGSC0003DMG400012154 Solanum tuberosum PGSC0003DMG400012154 I 0.708
Solyc08g082210.2 Solanum lycopersicum Solyc08g082210.2 I 0.708
Bostr.0568s0279 Boechera stricta Bostr.0568s0279 I 0.708
Cagra.0917s0073 Capsella grandiflora Cagra.0917s0073 I 0.708
Carubv10026925m.g Capsella rubella Carubv10026925m.g I 0.708
PK09586.1 Cannabis sativa PK09586.1 I 0.708
TCM_016452 Theobroma cacao TCM_016452 I 0.706
AT5G65130 Arabidopsis thaliana AT5G65130 D 0.702
scaffold_803239.1 Arabidopsis lyrata scaffold_803239.1 I 0.702
Gorai.012G130600 Gossypium raimondii Gorai.012G130600 I 0.700
ERF061 Arabidopsis thaliana AT1G64380 I 0.698
fgenesh2_kg.2__42__AT1G64380.1 Arabidopsis lyrata fgenesh2_kg.2__42__AT1G64380.1 I 0.698
GLYMA01G43450 Glycine max GLYMA01G43450 I 0.698
GLYMA11G02050 Glycine max GLYMA11G02050 I 0.698
POPTR_0001s10540 Populus trichocarpa POPTR_0001s10540 I 0.698
PRUPE_ppa009005mg Prunus persica PRUPE_ppa009005mg I 0.698
Cla011093 Citrullus lanatus Cla011093 I 0.698
Pm024053 Prunus mume Pm024053 I 0.698
30190.m010825 Ricinus communis 30190.m010825 I 0.698
mgf021167m Mimulus guttatus mgf021167m I 0.698
Aquca_037_00132 Aquilegia coerulea Aquca_037_00132 I 0.698
Bostr.29223s0053 Boechera stricta Bostr.29223s0053 I 0.698
Cagra.0062s0002 Capsella grandiflora Cagra.0062s0002 I 0.698
Carubv10020622m.g Capsella rubella Carubv10020622m.g I 0.698
Eucgr.E00857 Eucalyptus grandis Eucgr.E00857 I 0.698
gene32084-v1.0-hybrid Fragaria vesca gene32084-v1.0-hybrid I 0.698
Lus10001898.g Linum usitatissimum Lus10001898.g I 0.698
Lus10003889.g Linum usitatissimum Lus10003889.g I 0.698
MDP0000292965 Malus domestica MDP0000292965 I 0.698
MDP0000861708 Malus domestica MDP0000861708 I 0.698
SapurV1A.0035s0570 Salix purpurea SapurV1A.0035s0570 I 0.698
SapurV1A.0237s0310 Salix purpurea SapurV1A.0237s0310 I 0.698
Thhalv10023588m.g Eutrema salsugineum Thhalv10023588m.g I 0.698
chr2.CM0060.390.nc Lotus japonicus chr2.CM0060.390.nc I 0.698
VIT_02s0025g01360 Vitis vinifera VIT_02s0025g01360 I 0.696
cassava42814.valid.m1 Manihot esculenta cassava42814.valid.m1 I 0.696
POPTR_0003s13910 Populus trichocarpa POPTR_0003s13910 I 0.695
VIT_19s0014g03180 Vitis vinifera VIT_19s0014g03180 I 0.694
AMTR_s00107p00095070 Amborella trichopoda AMTR_s00107p00095070 I 0.693
Ca_15031 Cicer arietinum Ca_15031 I 0.689
Gorai.004G133800 Gossypium raimondii Gorai.004G133800 I 0.689
Cla011559 Citrullus lanatus Cla011559 I 0.686
Cucsa.303840 Cucumis sativus Cucsa.303840 I 0.686
Ciclev10021265m.g Citrus clementina Ciclev10021265m.g I 0.684
orange1.1g045091m.g Citrus sinensis orange1.1g045091m.g I 0.684
SELMODRAFT_104980 Selaginella moellendorffii SELMODRAFT_104980 I 0.679
Gorai.007G240700 Gossypium raimondii Gorai.007G240700 I 0.678