GSMUA_Achr3G05070_001 (Musa acuminata)
AP2

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00847 (AP2) IPR001471 GSMUA_Achr3G05070_001 T002343_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
PLT1
M06622_2.00 		Arabidopsis thaliana
DDCACGNWWHYCRAGRHNN
NNDYCTYGRDWWNCGTGHH		 Dap-seq
OMalley et al.(2016)
PLT1_col_a 		0.877 0.924
PLT1
M06623_2.00 		Arabidopsis thaliana
DYDCRNWTYYCRAG
CTYGRRAWNYGHRH		 Dap-seq
OMalley et al.(2016)
PLT1_colamp_a 		0.877 0.924
Q6SA75_TOBAC
M09733_2.00 		Nicotiana tabacum Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$ANTL_01 		0.851 0.876
Q6SA75_TOBAC
M09734_2.00 		Nicotiana tabacum Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$ANTL_02 		0.851 0.876
ANT
M02647_2.00 		Arabidopsis thaliana
DNRCACRNWTCCCVADGYNHW
WDNRCHTBGGGAWNYGTGYNH		 SELEX
Mathelier et al.(2014)
MA0571.1 		0.848 0.876
ANT
M09705_2.00 		Arabidopsis thaliana
CACRNWTCCCRAKG
CMTYGGGAWNYGTG		 Transfac
Matys et al.(2006)
P$ANT_01 		0.848 0.876
AIL7
M06688_2.00 		Arabidopsis thaliana
CRNWTHYCRAG
CTYGRDAWNYG		 Dap-seq
OMalley et al.(2016)
AIL7_col_a 		0.795 0.838
AIL7
M06689_2.00 		Arabidopsis thaliana
DCRNWTHYCRAG
CTYGRDAWNYGH		 Dap-seq
OMalley et al.(2016)
AIL7_colamp_a 		0.795 0.838
For this family, TFs with SR scores > 0.677 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
GSMUA_Achr3P05070_001 AP2 124 185
GSMUA_Achr3P05070_001 AP2 227 279

Links

Other AP2 family TFs
Other Musa acuminata TFs

548 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
ANCCAN_24528 Ancylostoma caninum ANCCAN_24528 I 0.000
ANCCEY_05532 Ancylostoma ceylanicum ANCCEY_05532 I 0.000
ANCDUO_15498 Ancylostoma duodenale ANCDUO_15498 I 0.000
ASIM_0001463201 Anisakis simplex ASIM_0001463201 I 0.000
ASU_10535 Ascaris suum ASU_10535 I 0.000
Bm3354 Brugia malayi Bm3354 I 0.000
BXY_0383300 Bursaphelenchus xylophilus BXY_0383300 I 0.000
CBN13459 Caenorhabditis brenneri CBN13459 I 0.000
CJA41396 Caenorhabditis japonica CJA41396 I 0.000
CRE30875 Caenorhabditis remanei CRE30875 I 0.000
D917_09068 Trichinella nativa D917_09068 I 0.000
D918_08675 Trichuris suis D918_08675 I 0.000
DICVIV_00143 Dictyocaulus viviparus DICVIV_00143 I 0.000
DME_0000006201 Dracunculus medinensis DME_0000006201 I 0.000
EFV59674 Trichinella spiralis EFV59674 I 0.000
EVEC_0001125701 Enterobius vermicularis EVEC_0001125701 I 0.000
GPLIN_001288500 Globodera pallida GPLIN_001288500 I 0.000
HCOI00904800 Haemonchus contortus HCOI00904800 I 0.000
HCOI01698200 Haemonchus contortus HCOI01698200 I 0.000
HPLM_0001331501 Haemonchus placei HPLM_0001331501 I 0.000
L596_g14520 Steinernema carpocapsae L596_g14520 I 0.000
L889_g19350 Steinernema feltiae L889_g19350 I 0.000
L892_g10848 Steinernema scapterisci L892_g10848 I 0.000
L898_g13372 Steinernema monticolum L898_g13372 I 0.000
LOAG_18740 Loa loa LOAG_18740 I 0.000
MhA1_Contig454.frz3.fgene1 Meloidogyne hapla MhA1_Contig454.frz3.fgene1 I 0.000
Minc07594 Meloidogyne incognita Minc07594 I 0.000
nAv.1.0.1.g03797 Acanthocheilonema viteae nAv.1.0.1.g03797 I 0.000
nDi.2.2.2.g00707 Dirofilaria immitis nDi.2.2.2.g00707 I 0.000
NECAME_02245 Necator americanus NECAME_02245 I 0.000
nLs.2.1.2.g09142 Litomosoides sigmodontis nLs.2.1.2.g09142 I 0.000
nOo.2.0.1.g03888 Onchocerca ochengi nOo.2.0.1.g03888 I 0.000
OFLC_0000354401 Onchocerca flexuosa OFLC_0000354401 I 0.000
PPA20237 Pristionchus pacificus PPA20237 I 0.000
PTRK_0001160400 Parastrongyloides trichosuri PTRK_0001160400 I 0.000
RSKR_0000889800 Rhabditophanes kr3021 RSKR_0000889800 I 0.000
SBAD_0000338201 Soboliphyme baturini SBAD_0000338201 I 0.000
scaffold248-EXSNAP2012.2 Pristionchus exspectatus scaffold248-EXSNAP2012.2 I 0.000
SMUV_0000624601 Syphacia muris SMUV_0000624601 I 0.000
SPAL_0001358300 Strongyloides papillosus SPAL_0001358300 I 0.000
SSTP_0000584500 Strongyloides stercoralis SSTP_0000584500 I 0.000
SVE_0953600 Strongyloides venezuelensis SVE_0953600 I 0.000
TCNE_0001279201 Toxocara canis TCNE_0001279201 I 0.000
TELCIR_04334 Teladorsagia circumcincta TELCIR_04334 I 0.000
TELCIR_24378 Teladorsagia circumcincta TELCIR_24378 I 0.000
TMUE_s0041001100 Trichuris muris TMUE_s0041001100 I 0.000
bcl-11 Caenorhabditis elegans WBGene00017430 D 0.000
WBGene00244008 Onchocerca volvulus WBGene00244008 I 0.000
WUBG_02612 Wuchereria bancrofti WUBG_02612 I 0.000