GPLIN_001288500 (Globodera pallida)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00096 (zf-C2H2) IPR007087 GPLIN_001288500 T153611_2.00 WormBase:ParaSite (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
bcl-11
M00641_2.00 		Caenorhabditis elegans
NNTGACCRNN
NNYGGTCANN		 PBM
Narasimhan et al.(2015)
pTH10807 		0.800 0.897
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
GPLIN_001288500 C2H2 ZF 675 697
GPLIN_001288500 C2H2 ZF 703 725
GPLIN_001288500 C2H2 ZF 733 754

Links

Other C2H2 ZF family TFs
Other Globodera pallida TFs

49 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
MhA1_Contig454.frz3.fgene1 Meloidogyne hapla MhA1_Contig454.frz3.fgene1 I 0.820
BXY_0383300 Bursaphelenchus xylophilus BXY_0383300 I 0.817
Minc07594 Meloidogyne incognita Minc07594 I 0.816
WUBG_02612 Wuchereria bancrofti WUBG_02612 I 0.804
Bm3354 Brugia malayi Bm3354 I 0.804
LOAG_18740 Loa loa LOAG_18740 I 0.804
nAv.1.0.1.g03797 Acanthocheilonema viteae nAv.1.0.1.g03797 I 0.804
nDi.2.2.2.g00707 Dirofilaria immitis nDi.2.2.2.g00707 I 0.804
nLs.2.1.2.g09142 Litomosoides sigmodontis nLs.2.1.2.g09142 I 0.804
OFLC_0000354401 Onchocerca flexuosa OFLC_0000354401 I 0.804
PTRK_0001160400 Parastrongyloides trichosuri PTRK_0001160400 I 0.804
SPAL_0001358300 Strongyloides papillosus SPAL_0001358300 I 0.804
SSTP_0000584500 Strongyloides stercoralis SSTP_0000584500 I 0.804
SVE_0953600 Strongyloides venezuelensis SVE_0953600 I 0.804
CBG18919 Caenorhabditis briggsae CBG18919 I 0.800
CBN13459 Caenorhabditis brenneri CBN13459 I 0.800
CJA41396 Caenorhabditis japonica CJA41396 I 0.800
CRE30875 Caenorhabditis remanei CRE30875 I 0.800
bcl-11 Caenorhabditis elegans WBGene00017430 D 0.800
WBGene00244008 Onchocerca volvulus WBGene00244008 I 0.800
ASU_10535 Ascaris suum ASU_10535 I 0.800
DME_0000006201 Dracunculus medinensis DME_0000006201 I 0.800
L596_g14520 Steinernema carpocapsae L596_g14520 I 0.800
L889_g19350 Steinernema feltiae L889_g19350 I 0.800
L892_g10848 Steinernema scapterisci L892_g10848 I 0.800
L898_g13372 Steinernema monticolum L898_g13372 I 0.800
nOo.2.0.1.g03888 Onchocerca ochengi nOo.2.0.1.g03888 I 0.800
RSKR_0000889800 Rhabditophanes kr3021 RSKR_0000889800 I 0.800
TCNE_0001279201 Toxocara canis TCNE_0001279201 I 0.800
EVEC_0001125701 Enterobius vermicularis EVEC_0001125701 I 0.797
SMUV_0000624601 Syphacia muris SMUV_0000624601 I 0.797
PPA20237 Pristionchus pacificus PPA20237 I 0.792
scaffold248-EXSNAP2012.2 Pristionchus exspectatus scaffold248-EXSNAP2012.2 I 0.792
ANCCAN_24528 Ancylostoma caninum ANCCAN_24528 I 0.784
ANCCEY_05532 Ancylostoma ceylanicum ANCCEY_05532 I 0.784
HCOI00904800 Haemonchus contortus HCOI00904800 I 0.781
HCOI01698200 Haemonchus contortus HCOI01698200 I 0.781
HPLM_0001331501 Haemonchus placei HPLM_0001331501 I 0.781
EFV59674 Trichinella spiralis EFV59674 I 0.778
ASIM_0001463201 Anisakis simplex ASIM_0001463201 I 0.778
D917_09068 Trichinella nativa D917_09068 I 0.778
D918_08675 Trichuris suis D918_08675 I 0.778
TMUE_s0041001100 Trichuris muris TMUE_s0041001100 I 0.778
SBAD_0000338201 Soboliphyme baturini SBAD_0000338201 I 0.771
ANCDUO_15498 Ancylostoma duodenale ANCDUO_15498 I 0.762
NECAME_02245 Necator americanus NECAME_02245 I 0.762
DICVIV_00143 Dictyocaulus viviparus DICVIV_00143 I 0.761
TELCIR_04334 Teladorsagia circumcincta TELCIR_04334 I 0.761
TELCIR_24378 Teladorsagia circumcincta TELCIR_24378 I 0.761