cassava35062.m1 (Manihot esculenta)
AP2

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00847 (AP2) IPR001471 cassava35062.m1 T006897_2.00 JGI (2012-Mar-17)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
DREB1D
M06678_2.00 		Arabidopsis thaliana
NHBRCCGACRTNN
NNAYGTCGGYVDN		 Dap-seq
OMalley et al.(2016)
CBF4_col_a 		0.807 0.960
DREB1D
M06679_2.00 		Arabidopsis thaliana
HYRCCGACATND
HNATGTCGGYRD		 Dap-seq
OMalley et al.(2016)
CBF4_colamp_a 		0.807 0.960
DREB1A
M01624_2.00 		Arabidopsis thaliana
NRCCGACNNN
NNNGTCGGYN		 PBM
Weirauch et al.(2014)
pTH8163 		0.804 0.940
DREB1A
M01625_2.00 		Arabidopsis thaliana
NNRCCGACNW
WNGTCGGYNN		 PBM
Weirauch et al.(2014)
pTH9718 		0.804 0.940
DREB1A
M06641_2.00 		Arabidopsis thaliana
HNYBRCCGACDWNN
NNWHGTCGGYVRND		 Dap-seq
OMalley et al.(2016)
CBF3_col_a 		0.804 0.940
DREB1A
M06642_2.00 		Arabidopsis thaliana
YBRCCGACATN
NATGTCGGYVR		 Dap-seq
OMalley et al.(2016)
CBF3_colamp_a 		0.804 0.940
DREB1C
M01623_2.00 		Arabidopsis thaliana
RCCGACAT
ATGTCGGY		 PBM
Weirauch et al.(2014)
pTH8187 		0.768 0.880
DREB1C
M06639_2.00 		Arabidopsis thaliana
NNNHBRCCGACATNN
NNATGTCGGYVDNNN		 Dap-seq
OMalley et al.(2016)
CBF2_col_a 		0.768 0.880
DREB1C
M06640_2.00 		Arabidopsis thaliana
NYBRCCGACATVN
NBATGTCGGYVRN		 Dap-seq
OMalley et al.(2016)
CBF2_colamp_a 		0.768 0.880
DREB1G
M01635_2.00 		Oryza sativa
NYGCCGACAN
NTGTCGGCRN		 PBM
Weirauch et al.(2014)
pTH8352 		0.746 0.840
DREB1G
M09707_2.00 		Oryza sativa Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$DREB1G_01 		0.746 0.840
DREB1F
M00962_2.00 		Arabidopsis thaliana
NRCCGACNN
NNGTCGGYN		 PBM
LehtiShiu et al.(2015)
DDF1_Arabidopsis_thaliana 		0.732 0.800
DREB1F
M00840_2.00 		Arabidopsis thaliana
NRYCGACNN
NNGTCGRYN		 PBM
Franco-Zorrilla et al.(2014)
DDF1 		0.732 0.800
DDF1
M00964_2.00 		Arabidopsis lyrata
NRYCGACDY
RHGTCGRYN		 PBM
LehtiShiu et al.(2015)
DDF1_Arabidopsis_lyrata 		0.732 0.800
DREB1F
M06564_2.00 		Arabidopsis thaliana
NHNHYGYCGACATNN
NNATGTCGRCRDNDN		 Dap-seq
OMalley et al.(2016)
DDF1_col_a 		0.732 0.800
DREB1F
M06565_2.00 		Arabidopsis thaliana
HNDNNRYCGACAH
DTGTCGRYNNHND		 Dap-seq
OMalley et al.(2016)
DDF1_colamp_a 		0.732 0.800
DREB1F
M09701_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$DREB1F_03 		0.732 0.800
ddf2
M00965_2.00 		Arabidopsis lyrata
NRYCGACAT
ATGTCGRYN		 PBM
LehtiShiu et al.(2015)
DDF2_Arabidopsis_lyrata 		0.704 0.760
Q8S2T3_BRANA
M09745_2.00 		Brassica napus Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$CBF16_01 		0.702 0.900
Q6T3U0_BRANA
M09743_2.00 		Brassica napus Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$DREBII1_01 		0.702 0.900
DREB1E
M09709_2.00 		Oryza sativa Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$DREB1E_01 		0.696 0.820
DREB1B
M06643_2.00 		Arabidopsis thaliana
DHBRCCGACRHN
NDYGTCGGYVDH		 Dap-seq
OMalley et al.(2016)
CBF1_col_a 		0.683 0.900
DREB1B
M06644_2.00 		Arabidopsis thaliana
NNNHBRCCGACAWNN
NNWTGTCGGYVDNNN		 Dap-seq
OMalley et al.(2016)
CBF1_colamp_a 		0.683 0.900
For this family, TFs with SR scores > 0.677 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
cassava35062.m1 AP2 67 118

Links

Other AP2 family TFs
Other Manihot esculenta TFs

223 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
TVAG_002150 Trichomonas vaginalis TVAG_002150 N 0.000
TVAG_013210 Trichomonas vaginalis TVAG_013210 N 0.000
TVAG_024040 Trichomonas vaginalis TVAG_024040 N 0.000
TVAG_098980 Trichomonas vaginalis TVAG_098980 N 0.000
TVAG_153670 Trichomonas vaginalis TVAG_153670 N 0.000
TVAG_183950 Trichomonas vaginalis TVAG_183950 N 0.000
TVAG_236370 Trichomonas vaginalis TVAG_236370 N 0.000
TVAG_240230 Trichomonas vaginalis TVAG_240230 N 0.000
TVAG_253420 Trichomonas vaginalis TVAG_253420 N 0.000
TVAG_301230 Trichomonas vaginalis TVAG_301230 N 0.000
TVAG_346500 Trichomonas vaginalis TVAG_346500 N 0.000
TVAG_385510 Trichomonas vaginalis TVAG_385510 N 0.000
TVAG_492220 Trichomonas vaginalis TVAG_492220 N 0.000
TVAG_503770 Trichomonas vaginalis TVAG_503770 N 0.000
TVAG_522310 Trichomonas vaginalis TVAG_522310 N 0.000
TVAG_528530 Trichomonas vaginalis TVAG_528530 N 0.000
TVAG_562960 Trichomonas vaginalis TVAG_562960 N 0.000
TVAG_576750 Trichomonas vaginalis TVAG_576750 N 0.000
TVAG_583560 Trichomonas vaginalis TVAG_583560 N 0.000
TVAG_595670 Trichomonas vaginalis TVAG_595670 N 0.000
TVAG_601940 Trichomonas vaginalis TVAG_601940 N 0.000
TVAG_604280 Trichomonas vaginalis TVAG_604280 N 0.000
TVAG_605680 Trichomonas vaginalis TVAG_605680 N 0.000