DREB1A (Arabidopsis thaliana)
AP2

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00847 (AP2) IPR001471 AT4G25480 T000493_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
DREB1A
M01624_2.00		 Arabidopsis thaliana
NRCCGACNNN
NNNGTCGGYN		 PBM
Weirauch et al.(2014)
pTH8163		 (Direct) (Direct)
DREB1A
M01625_2.00		 Arabidopsis thaliana
NNRCCGACNW
WNGTCGGYNN		 PBM
Weirauch et al.(2014)
pTH9718		 (Direct) (Direct)
DREB1A
M06641_2.00		 Arabidopsis thaliana
HNYBRCCGACDWNN
NNWHGTCGGYVRND		 Dap-seq
OMalley et al.(2016)
CBF3_col_a		 (Direct) (Direct)
DREB1A
M06642_2.00		 Arabidopsis thaliana
YBRCCGACATN
NATGTCGGYVR		 Dap-seq
OMalley et al.(2016)
CBF3_colamp_a		 (Direct) (Direct)

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
DREB1C
M01623_2.00 		Arabidopsis thaliana
RCCGACAT
ATGTCGGY		 PBM
Weirauch et al.(2014)
pTH8187 		0.799 0.940
DREB1C
M06639_2.00 		Arabidopsis thaliana
NNNHBRCCGACATNN
NNATGTCGGYVDNNN		 Dap-seq
OMalley et al.(2016)
CBF2_col_a 		0.799 0.940
DREB1C
M06640_2.00 		Arabidopsis thaliana
NYBRCCGACATVN
NBATGTCGGYVRN		 Dap-seq
OMalley et al.(2016)
CBF2_colamp_a 		0.799 0.940
DREB1D
M06678_2.00 		Arabidopsis thaliana
NHBRCCGACRTNN
NNAYGTCGGYVDN		 Dap-seq
OMalley et al.(2016)
CBF4_col_a 		0.778 0.940
DREB1D
M06679_2.00 		Arabidopsis thaliana
HYRCCGACATND
HNATGTCGGYRD		 Dap-seq
OMalley et al.(2016)
CBF4_colamp_a 		0.778 0.940
DREB1G
M01635_2.00 		Oryza sativa
NYGCCGACAN
NTGTCGGCRN		 PBM
Weirauch et al.(2014)
pTH8352 		0.750 0.820
DREB1G
M09707_2.00 		Oryza sativa Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$DREB1G_01 		0.750 0.820
DREB1B
M06643_2.00 		Arabidopsis thaliana
DHBRCCGACRHN
NDYGTCGGYVDH		 Dap-seq
OMalley et al.(2016)
CBF1_col_a 		0.713 0.960
DREB1B
M06644_2.00 		Arabidopsis thaliana
NNNHBRCCGACAWNN
NNWTGTCGGYVDNNN		 Dap-seq
OMalley et al.(2016)
CBF1_colamp_a 		0.713 0.960
DREB1F
M00962_2.00 		Arabidopsis thaliana
NRCCGACNN
NNGTCGGYN		 PBM
LehtiShiu et al.(2015)
DDF1_Arabidopsis_thaliana 		0.703 0.760
DREB1F
M00840_2.00 		Arabidopsis thaliana
NRYCGACNN
NNGTCGRYN		 PBM
Franco-Zorrilla et al.(2014)
DDF1 		0.703 0.760
DDF1
M00964_2.00 		Arabidopsis lyrata
NRYCGACDY
RHGTCGRYN		 PBM
LehtiShiu et al.(2015)
DDF1_Arabidopsis_lyrata 		0.703 0.760
DREB1F
M06564_2.00 		Arabidopsis thaliana
NHNHYGYCGACATNN
NNATGTCGRCRDNDN		 Dap-seq
OMalley et al.(2016)
DDF1_col_a 		0.703 0.760
DREB1F
M06565_2.00 		Arabidopsis thaliana
HNDNNRYCGACAH
DTGTCGRYNNHND		 Dap-seq
OMalley et al.(2016)
DDF1_colamp_a 		0.703 0.760
DREB1F
M09701_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$DREB1F_03 		0.703 0.760
DREB1E
M09709_2.00 		Oryza sativa Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$DREB1E_01 		0.701 0.800
Q8S2T3_BRANA
M09745_2.00 		Brassica napus Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$CBF16_01 		0.696 0.860
Q6T3U0_BRANA
M09743_2.00 		Brassica napus Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$DREBII1_01 		0.696 0.860
ddf2
M00965_2.00 		Arabidopsis lyrata
NRYCGACAT
ATGTCGRYN		 PBM
LehtiShiu et al.(2015)
DDF2_Arabidopsis_lyrata 		0.681 0.760
For this family, TFs with SR scores > 0.677 will likely have a similar motif

Experimental Constructs

Motif ID Domain From To Sequence
M01624_2.00 AP2 49 100
M01625_2.00 AP2 49 100

DNA Binding Domains

Protein ID Domain From To Sequence
AT4G25480.1 AP2 49 100

Links

Other AP2 family TFs
Other Arabidopsis thaliana TFs

204 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
CBF2 Arabidopsis lyrata fgenesh2_kg.7__1712__AT4G25470.1 I 0.828
Bostr.7867s0359 Boechera stricta Bostr.7867s0359 I 0.820
Bostr.7867s0361 Boechera stricta Bostr.7867s0361 I 0.820
Cagra.28753s0001 Capsella grandiflora Cagra.28753s0001 I 0.820
Carubv10005709m.g Capsella rubella Carubv10005709m.g I 0.820
mgf026642m Mimulus guttatus mgf026642m I 0.812
gene13329-v1.0-hybrid Fragaria vesca gene13329-v1.0-hybrid I 0.805
PK23332.1 Cannabis sativa PK23332.1 I 0.805
POPTR_0012s13870 Populus trichocarpa POPTR_0012s13870 I 0.804
30147.m014313 Ricinus communis 30147.m014313 I 0.804
cassava35062.m1 Manihot esculenta cassava35062.m1 I 0.804
Gorai.007G010100 Gossypium raimondii Gorai.007G010100 I 0.804
Bostr.7867s0360 Boechera stricta Bostr.7867s0360 I 0.800
Thhalv10027405m.g Eutrema salsugineum Thhalv10027405m.g I 0.800
DREB1C Arabidopsis thaliana AT4G25470 D 0.799
POPTR_0015s13830 Populus trichocarpa POPTR_0015s13830 I 0.798
Cagra.2248s0026 Capsella grandiflora Cagra.2248s0026 I 0.797
PRUPE_ppa010935mg Prunus persica PRUPE_ppa010935mg I 0.793
GLYMA09G27180 Glycine max GLYMA09G27180 I 0.792
Cucsa.251030 Cucumis sativus Cucsa.251030 I 0.792
Cla006315 Citrullus lanatus Cla006315 I 0.790
Eucgr.D01925 Eucalyptus grandis Eucgr.D01925 I 0.790
Solyc03g026280.2 Solanum lycopersicum Solyc03g026280.2 I 0.788
Solyc03g026270.1 Solanum lycopersicum Solyc03g026270.1 I 0.784
SapurV1A.0068s0560 Salix purpurea SapurV1A.0068s0560 I 0.782
SapurV1A.0400s0160 Salix purpurea SapurV1A.0400s0160 I 0.782
Gorai.006G046200 Gossypium raimondii Gorai.006G046200 I 0.781
Cla002362 Citrullus lanatus Cla002362 I 0.780
DREB1D Arabidopsis thaliana AT5G51990 D 0.778
Bo9g104770 Brassica oleracea Bo9g104770 I 0.778
Bra028290 Brassica rapa Bra028290 I 0.778
CBF4 Arabidopsis lyrata scaffold_801637.1 I 0.778
Solyc03g124110.1 Solanum lycopersicum Solyc03g124110.1 I 0.778
Bostr.15774s0346 Boechera stricta Bostr.15774s0346 I 0.778
Cagra.0094s0011 Capsella grandiflora Cagra.0094s0011 I 0.778
Carubv10027759m.g Capsella rubella Carubv10027759m.g I 0.778
Thhalv10015252m.g Eutrema salsugineum Thhalv10015252m.g I 0.778
Eucgr.E00529 Eucalyptus grandis Eucgr.E00529 I 0.776
cassava18935.valid.m1 Manihot esculenta cassava18935.valid.m1 I 0.775
gene32378-v1.0-hybrid Fragaria vesca gene32378-v1.0-hybrid I 0.775
evm.TU.supercontig_74.84 Carica papaya evm.TU.supercontig_74.84 I 0.771
VIT_16s0100g00380 Vitis vinifera VIT_16s0100g00380 I 0.768
Cla011674 Citrullus lanatus Cla011674 I 0.767
PGSC0003DMG400014311 Solanum tuberosum PGSC0003DMG400014311 I 0.762
cassava41192.m1 Manihot esculenta cassava41192.m1 I 0.760
Gorai.008G243600 Gossypium raimondii Gorai.008G243600 I 0.760
mgf017136m Mimulus guttatus mgf017136m I 0.759
PGSC0003DMG400014310 Solanum tuberosum PGSC0003DMG400014310 I 0.758
Cucsa.166340 Cucumis sativus Cucsa.166340 I 0.758
TCM_016175 Theobroma cacao TCM_016175 I 0.756
BRADI3G51630 Brachypodium distachyon BRADI3G51630 I 0.755
MLOC_75886 Hordeum vulgare MLOC_75886 I 0.755
PGSC0003DMG400014309 Solanum tuberosum PGSC0003DMG400014309 I 0.755
MDP0000154764 Malus domestica MDP0000154764 I 0.755
MDP0000198054 Malus domestica MDP0000198054 I 0.754
MTR_6g466130 Medicago truncatula MTR_6g466130 I 0.753
GSMUA_Achr8G11980_001 Musa acuminata GSMUA_Achr8G11980_001 I 0.752
PRUPE_ppa010800mg Prunus persica PRUPE_ppa010800mg I 0.752
Pm023775 Prunus mume Pm023775 I 0.752
POPTR_0009s14990 Populus trichocarpa POPTR_0009s14990 I 0.751
SapurV1A.0219s0320 Salix purpurea SapurV1A.0219s0320 I 0.751
DREB1G Oryza indica BGIOSGA008804 I 0.750
GRMZM2G137341 Zea mays GRMZM2G137341 I 0.750
LPERR02G22610 Leersia perrieri LPERR02G22610 I 0.750
OBART02G27760 Oryza barthii OBART02G27760 I 0.750
OGLUM02G28340 Oryza glumaepatula OGLUM02G28340 I 0.750
OMERI02G26980 Oryza meridionalis OMERI02G26980 I 0.750
ONIVA02G30790 Oryza nivara ONIVA02G30790 I 0.750
OPUNC02G25480 Oryza punctata OPUNC02G25480 I 0.750
ORUFI02G29230 Oryza rufipogon ORUFI02G29230 I 0.750
DREB1G Oryza sativa OS02G0677300 D 0.750
Sb04g031950 Sorghum bicolor Sb04g031950 I 0.750
VIT_02s0025g04460 Vitis vinifera VIT_02s0025g04460 I 0.750
Pavir.Aa00912 Panicum virgatum Pavir.Aa00912 I 0.750
Pavir.Ab02685 Panicum virgatum Pavir.Ab02685 I 0.750
GSMUA_Achr11G21630_001 Musa acuminata GSMUA_Achr11G21630_001 I 0.749
VIT_11s0016g02140 Vitis vinifera VIT_11s0016g02140 I 0.745
Carubv10006965m.g Capsella rubella Carubv10006965m.g I 0.745
GLYMA10G38440 Glycine max GLYMA10G38440 I 0.744
Eucgr.A02818 Eucalyptus grandis Eucgr.A02818 I 0.744
mgf019061m Mimulus guttatus mgf019061m I 0.743
Aquca_012_00144 Aquilegia coerulea Aquca_012_00144 I 0.743
PRUPE_ppa010909mg Prunus persica PRUPE_ppa010909mg I 0.742
Cucsa.302750 Cucumis sativus Cucsa.302750 I 0.742
Si018262m.g Setaria italica Si018262m.g I 0.740
Ciclev10021923m.g Citrus clementina Ciclev10021923m.g I 0.740
POPTR_0001s08710 Populus trichocarpa POPTR_0001s08710 I 0.739
GLYMA20G29410 Glycine max GLYMA20G29410 I 0.737
PRUPE_ppa021197mg Prunus persica PRUPE_ppa021197mg I 0.737
Pm023769 Prunus mume Pm023769 I 0.737
Aquca_013_00435 Aquilegia coerulea Aquca_013_00435 I 0.737
Ciclev10007068m.g Citrus clementina Ciclev10007068m.g I 0.737
orange1.1g028094m.g Citrus sinensis orange1.1g028094m.g I 0.737
Aquca_013_00436 Aquilegia coerulea Aquca_013_00436 I 0.735
PGSC0003DMG400012524 Solanum tuberosum PGSC0003DMG400012524 I 0.734
Pm023772 Prunus mume Pm023772 I 0.733
Solyc08g007820.1 Solanum lycopersicum Solyc08g007820.1 I 0.731
60638.m00016 Ricinus communis 60638.m00016 I 0.731
MTR_6g465510 Medicago truncatula MTR_6g465510 I 0.729
MTR_6g465530 Medicago truncatula MTR_6g465530 I 0.729
30190.m011120 Ricinus communis 30190.m011120 I 0.729
evm.TU.supercontig_5.66 Carica papaya evm.TU.supercontig_5.66 I 0.728
PGSC0003DMG400012525 Solanum tuberosum PGSC0003DMG400012525 I 0.727
POPTR_0001s08720 Populus trichocarpa POPTR_0001s08720 I 0.727
orange1.1g029015m.g Citrus sinensis orange1.1g029015m.g I 0.727
SapurV1A.0282s0070 Salix purpurea SapurV1A.0282s0070 I 0.727
MTR_6g465690 Medicago truncatula MTR_6g465690 I 0.725
MTR_6g466000 Medicago truncatula MTR_6g466000 I 0.725
GLYMA12G30740 Glycine max GLYMA12G30740 I 0.724
MTR_1g101600 Medicago truncatula MTR_1g101600 I 0.724
POPTR_0004s19820 Populus trichocarpa POPTR_0004s19820 I 0.723
PGSC0003DMG400038366 Solanum tuberosum PGSC0003DMG400038366 I 0.719
30190.m011119 Ricinus communis 30190.m011119 I 0.718
SapurV1A.0045s0710 Salix purpurea SapurV1A.0045s0710 I 0.717
SapurV1A.0282s0080 Salix purpurea SapurV1A.0282s0080 I 0.717
mgf026339m Mimulus guttatus mgf026339m I 0.716
MTR_6g465460 Medicago truncatula MTR_6g465460 I 0.714
DREB1B Arabidopsis thaliana AT4G25490 D 0.713
Pm019386 Prunus mume Pm019386 I 0.713
Lus10001871.g Linum usitatissimum Lus10001871.g I 0.712
Lus10006332.g Linum usitatissimum Lus10006332.g I 0.712
Lus10006334.g Linum usitatissimum Lus10006334.g I 0.712
Lus10029601.g Linum usitatissimum Lus10029601.g I 0.712
Lus10029602.g Linum usitatissimum Lus10029602.g I 0.712
GLYMA13G39540 Glycine max GLYMA13G39540 I 0.709
LjSGA_037211.1 Lotus japonicus LjSGA_037211.1 I 0.709
MTR_6g465450 Medicago truncatula MTR_6g465450 I 0.708
PGSC0003DMG400004255 Solanum tuberosum PGSC0003DMG400004255 I 0.708
Bo01335s010 Brassica oleracea Bo01335s010 I 0.707
Bra016763 Brassica rapa Bra016763 I 0.707
MTR_8g006410 Medicago truncatula MTR_8g006410 I 0.707
MTR_6g465420 Medicago truncatula MTR_6g465420 I 0.706
MTR_6g465430 Medicago truncatula MTR_6g465430 I 0.706
Thhalv10009978m.g Eutrema salsugineum Thhalv10009978m.g I 0.706
Solyc01g009440.1 Solanum lycopersicum Solyc01g009440.1 I 0.705
AMTR_s00095p00096190 Amborella trichopoda AMTR_s00095p00096190 I 0.703
DREB1F Arabidopsis thaliana AT1G12610 D 0.703
DDF1 Arabidopsis lyrata fgenesh2_kg.1__1363__AT1G12610.1 D 0.703
Ca_04504 Cicer arietinum Ca_04504 I 0.703
cassava17064.m1 Manihot esculenta cassava17064.m1 I 0.702
mgf016974m Mimulus guttatus mgf016974m I 0.702
mgf018631m Mimulus guttatus mgf018631m I 0.702
mgf018934m Mimulus guttatus mgf018934m I 0.702
mgf022408m Mimulus guttatus mgf022408m I 0.702
DREB1E Oryza indica BGIOSGA016950 I 0.701
LPERR04G18190 Leersia perrieri LPERR04G18190 I 0.701
OBART04G22220 Oryza barthii OBART04G22220 I 0.701
OGLUM04G22260 Oryza glumaepatula OGLUM04G22260 I 0.701
OMERI04G18770 Oryza meridionalis OMERI04G18770 I 0.701
ONIVA04G20840 Oryza nivara ONIVA04G20840 I 0.701
OPUNC04G19970 Oryza punctata OPUNC04G19970 I 0.701
ORGLA04G0192900 Oryza glaberrima ORGLA04G0192900 I 0.701
ORUFI04G23890 Oryza rufipogon ORUFI04G23890 I 0.701
DREB1E Oryza sativa OS04G0572400 D 0.701
Bo8g108050 Brassica oleracea Bo8g108050 I 0.700
Bra026963 Brassica rapa Bra026963 I 0.700
Bra022770 Brassica rapa Bra022770 I 0.699
Aquca_013_00434 Aquilegia coerulea Aquca_013_00434 I 0.699
Aquca_122_00012 Aquilegia coerulea Aquca_122_00012 I 0.698
PRUPE_ppa017761mg Prunus persica PRUPE_ppa017761mg I 0.697
Carubv10006809m.g Capsella rubella Carubv10006809m.g I 0.697
orange1.1g026103m.g Citrus sinensis orange1.1g026103m.g I 0.697
Bo7g110320 Brassica oleracea Bo7g110320 I 0.696
Bra019162 Brassica rapa Bra019162 I 0.696
Cagra.0568s0171 Capsella grandiflora Cagra.0568s0171 I 0.696
Carubv10010303m.g Capsella rubella Carubv10010303m.g I 0.696
Q6T3U0_BRANA Brassica napus Q6T3U0_BRANA D 0.696
Q8S2T3_BRANA Brassica napus Q8S2T3_BRANA D 0.696
Lus10031657.g Linum usitatissimum Lus10031657.g I 0.695
Eucgr.A02820 Eucalyptus grandis Eucgr.A02820 I 0.694
Eucgr.A02824 Eucalyptus grandis Eucgr.A02824 I 0.694
Eucgr.A02826 Eucalyptus grandis Eucgr.A02826 I 0.694
Eucgr.A02832 Eucalyptus grandis Eucgr.A02832 I 0.694
GSMUA_Achr7G05900_001 Musa acuminata GSMUA_Achr7G05900_001 I 0.693
MTR_2g085015 Medicago truncatula MTR_2g085015 I 0.693
Bostr.13671s0200 Boechera stricta Bostr.13671s0200 I 0.693
Bo8g050800 Brassica oleracea Bo8g050800 I 0.692
Bra010460 Brassica rapa Bra010460 I 0.692
Cagra.2248s0025 Capsella grandiflora Cagra.2248s0025 I 0.692
Lus10027412.g Linum usitatissimum Lus10027412.g I 0.692
Aquca_122_00013 Aquilegia coerulea Aquca_122_00013 I 0.691
Eucgr.A02822 Eucalyptus grandis Eucgr.A02822 I 0.690
GRMZM2G042756 Zea mays GRMZM2G042756 I 0.689
Sb06g025900 Sorghum bicolor Sb06g025900 I 0.689
Si011005m.g Setaria italica Si011005m.g I 0.689
VIT_06s0061g01400 Vitis vinifera VIT_06s0061g01400 I 0.688
Eucgr.A02831 Eucalyptus grandis Eucgr.A02831 I 0.688
Ca_18948 Cicer arietinum Ca_18948 I 0.687
Pavir.Ga00931 Panicum virgatum Pavir.Ga00931 I 0.687
MTR_5g010930 Medicago truncatula MTR_5g010930 I 0.685
MTR_6g465850 Medicago truncatula MTR_6g465850 I 0.685
Eucgr.A02827 Eucalyptus grandis Eucgr.A02827 I 0.684
Eucgr.A02834 Eucalyptus grandis Eucgr.A02834 I 0.684
Eucgr.A02821 Eucalyptus grandis Eucgr.A02821 I 0.683
ddf2 Arabidopsis lyrata fgenesh2_kg.2__175__AT1G63030.1 D 0.681
GLYMA17G14111 Glycine max GLYMA17G14111 I 0.681
Bostr.22157s0019 Boechera stricta Bostr.22157s0019 I 0.681
Thhalv10023865m.g Eutrema salsugineum Thhalv10023865m.g I 0.681
chr3.LjT42M03.60.nd Lotus japonicus chr3.LjT42M03.60.nd I 0.681
AMTR_s00069p00141520 Amborella trichopoda AMTR_s00069p00141520 I 0.680
GLYMA16G32330 Glycine max GLYMA16G32330 I 0.679
GSMUA_Achr10G15510_001 Musa acuminata GSMUA_Achr10G15510_001 I 0.678
Lus10017829.g Linum usitatissimum Lus10017829.g I 0.678
cassava41218.m1 Manihot esculenta cassava41218.m1 I 0.677