CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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DREB1A
(
Arabidopsis thaliana
)
AP2
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF00847 (AP2)
IPR001471
AT4G25480
T000493_2.00
Ensembl (2018-Dec-8)
Link out
NCBI Gene Info:
encodes a member of the DREB subfamily A-1 of ERF/AP2 transcription factor family (CBF3). The protein contains one AP2 domain. There are six members in this subfamily, including CBF1, CBF2, and CBF3. This gene is involved in response to low temperature and abscisic acid.
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
DREB1A
M01624_2.00
Arabidopsis thaliana
NRCCGACNNN
NNNGTCGGYN
PBM
Weirauch et al.(2014)
pTH8163
(Direct)
(Direct)
DREB1A
M01625_2.00
Arabidopsis thaliana
NNRCCGACNW
WNGTCGGYNN
PBM
Weirauch et al.(2014)
pTH9718
(Direct)
(Direct)
DREB1A
M06641_2.00
Arabidopsis thaliana
HNYBRCCGACDWNN
NNWHGTCGGYVRND
Dap-seq
OMalley et al.(2016)
CBF3_col_a
(Direct)
(Direct)
DREB1A
M06642_2.00
Arabidopsis thaliana
YBRCCGACATN
NATGTCGGYVR
Dap-seq
OMalley et al.(2016)
CBF3_colamp_a
(Direct)
(Direct)
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
DREB1C
M01623_2.00
Arabidopsis thaliana
RCCGACAT
ATGTCGGY
PBM
Weirauch et al.(2014)
pTH8187
0.799
0.940
DREB1C
M06639_2.00
Arabidopsis thaliana
NNNHBRCCGACATNN
NNATGTCGGYVDNNN
Dap-seq
OMalley et al.(2016)
CBF2_col_a
0.799
0.940
DREB1C
M06640_2.00
Arabidopsis thaliana
NYBRCCGACATVN
NBATGTCGGYVRN
Dap-seq
OMalley et al.(2016)
CBF2_colamp_a
0.799
0.940
DREB1D
M06678_2.00
Arabidopsis thaliana
NHBRCCGACRTNN
NNAYGTCGGYVDN
Dap-seq
OMalley et al.(2016)
CBF4_col_a
0.778
0.940
DREB1D
M06679_2.00
Arabidopsis thaliana
HYRCCGACATND
HNATGTCGGYRD
Dap-seq
OMalley et al.(2016)
CBF4_colamp_a
0.778
0.940
DREB1G
M01635_2.00
Oryza sativa
NYGCCGACAN
NTGTCGGCRN
PBM
Weirauch et al.(2014)
pTH8352
0.750
0.820
DREB1G
M09707_2.00
Oryza sativa
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$DREB1G_01
0.750
0.820
DREB1B
M06643_2.00
Arabidopsis thaliana
DHBRCCGACRHN
NDYGTCGGYVDH
Dap-seq
OMalley et al.(2016)
CBF1_col_a
0.713
0.960
DREB1B
M06644_2.00
Arabidopsis thaliana
NNNHBRCCGACAWNN
NNWTGTCGGYVDNNN
Dap-seq
OMalley et al.(2016)
CBF1_colamp_a
0.713
0.960
DREB1F
M00962_2.00
Arabidopsis thaliana
NRCCGACNN
NNGTCGGYN
PBM
LehtiShiu et al.(2015)
DDF1_Arabidopsis_thaliana
0.703
0.760
DREB1F
M00840_2.00
Arabidopsis thaliana
NRYCGACNN
NNGTCGRYN
PBM
Franco-Zorrilla et al.(2014)
DDF1
0.703
0.760
DDF1
M00964_2.00
Arabidopsis lyrata
NRYCGACDY
RHGTCGRYN
PBM
LehtiShiu et al.(2015)
DDF1_Arabidopsis_lyrata
0.703
0.760
DREB1F
M06564_2.00
Arabidopsis thaliana
NHNHYGYCGACATNN
NNATGTCGRCRDNDN
Dap-seq
OMalley et al.(2016)
DDF1_col_a
0.703
0.760
DREB1F
M06565_2.00
Arabidopsis thaliana
HNDNNRYCGACAH
DTGTCGRYNNHND
Dap-seq
OMalley et al.(2016)
DDF1_colamp_a
0.703
0.760
DREB1F
M09701_2.00
Arabidopsis thaliana
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$DREB1F_03
0.703
0.760
DREB1E
M09709_2.00
Oryza sativa
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$DREB1E_01
0.701
0.800
Q8S2T3_BRANA
M09745_2.00
Brassica napus
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$CBF16_01
0.696
0.860
Q6T3U0_BRANA
M09743_2.00
Brassica napus
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$DREBII1_01
0.696
0.860
ddf2
M00965_2.00
Arabidopsis lyrata
NRYCGACAT
ATGTCGRYN
PBM
LehtiShiu et al.(2015)
DDF2_Arabidopsis_lyrata
0.681
0.760
For this family, TFs with SR scores >
0.677
will likely have a similar motif
Experimental Constructs
Motif ID
Domain
From
To
Sequence
M01624_2.00
AP2
49
100
PIYRGVRRRNSGKWVCEVREPNKKTRIWLGTFQTAEMAARAHDVAALALRGR
M01625_2.00
AP2
49
100
PIYRGVRRRNSGKWVCEVREPNKKTRIWLGTFQTAEMAARAHDVAALALRGR
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
AT4G25480.1
AP2
49
100
PIYRGVRRRNSGKWVCEVREPNKKTRIWLGTFQTAEMAARAHDVAALALRGR
Links
Other
AP2
family TFs
Other
Arabidopsis thaliana
TFs
204 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
CBF2
Arabidopsis lyrata
fgenesh2_kg.7__1712__AT4G25470.1
I
0.828
Carubv10005709m.g
Capsella rubella
Carubv10005709m.g
I
0.820
Bostr.7867s0361
Boechera stricta
Bostr.7867s0361
I
0.820
Cagra.28753s0001
Capsella grandiflora
Cagra.28753s0001
I
0.820
Bostr.7867s0359
Boechera stricta
Bostr.7867s0359
I
0.820
mgf026642m
Mimulus guttatus
mgf026642m
I
0.812
PK23332.1
Cannabis sativa
PK23332.1
I
0.805
gene13329-v1.0-hybrid
Fragaria vesca
gene13329-v1.0-hybrid
I
0.805
30147.m014313
Ricinus communis
30147.m014313
I
0.804
cassava35062.m1
Manihot esculenta
cassava35062.m1
I
0.804
Gorai.007G010100
Gossypium raimondii
Gorai.007G010100
I
0.804
POPTR_0012s13870
Populus trichocarpa
POPTR_0012s13870
I
0.804
Bostr.7867s0360
Boechera stricta
Bostr.7867s0360
I
0.800
Thhalv10027405m.g
Eutrema salsugineum
Thhalv10027405m.g
I
0.800
DREB1C
Arabidopsis thaliana
AT4G25470
D
0.799
POPTR_0015s13830
Populus trichocarpa
POPTR_0015s13830
I
0.798
Cagra.2248s0026
Capsella grandiflora
Cagra.2248s0026
I
0.797
PRUPE_ppa010935mg
Prunus persica
PRUPE_ppa010935mg
I
0.793
GLYMA09G27180
Glycine max
GLYMA09G27180
I
0.792
Cucsa.251030
Cucumis sativus
Cucsa.251030
I
0.792
Cla006315
Citrullus lanatus
Cla006315
I
0.790
Eucgr.D01925
Eucalyptus grandis
Eucgr.D01925
I
0.790
Solyc03g026280.2
Solanum lycopersicum
Solyc03g026280.2
I
0.788
Solyc03g026270.1
Solanum lycopersicum
Solyc03g026270.1
I
0.784
SapurV1A.0400s0160
Salix purpurea
SapurV1A.0400s0160
I
0.782
SapurV1A.0068s0560
Salix purpurea
SapurV1A.0068s0560
I
0.782
Gorai.006G046200
Gossypium raimondii
Gorai.006G046200
I
0.781
Cla002362
Citrullus lanatus
Cla002362
I
0.780
Thhalv10015252m.g
Eutrema salsugineum
Thhalv10015252m.g
I
0.778
Solyc03g124110.1
Solanum lycopersicum
Solyc03g124110.1
I
0.778
Bo9g104770
Brassica oleracea
Bo9g104770
I
0.778
Carubv10027759m.g
Capsella rubella
Carubv10027759m.g
I
0.778
Cagra.0094s0011
Capsella grandiflora
Cagra.0094s0011
I
0.778
DREB1D
Arabidopsis thaliana
AT5G51990
D
0.778
Bostr.15774s0346
Boechera stricta
Bostr.15774s0346
I
0.778
Bra028290
Brassica rapa
Bra028290
I
0.778
CBF4
Arabidopsis lyrata
scaffold_801637.1
I
0.778
Eucgr.E00529
Eucalyptus grandis
Eucgr.E00529
I
0.776
gene32378-v1.0-hybrid
Fragaria vesca
gene32378-v1.0-hybrid
I
0.775
cassava18935.valid.m1
Manihot esculenta
cassava18935.valid.m1
I
0.775
evm.TU.supercontig_74.84
Carica papaya
evm.TU.supercontig_74.84
I
0.771
VIT_16s0100g00380
Vitis vinifera
VIT_16s0100g00380
I
0.768
Cla011674
Citrullus lanatus
Cla011674
I
0.767
PGSC0003DMG400014311
Solanum tuberosum
PGSC0003DMG400014311
I
0.762
Gorai.008G243600
Gossypium raimondii
Gorai.008G243600
I
0.760
cassava41192.m1
Manihot esculenta
cassava41192.m1
I
0.760
mgf017136m
Mimulus guttatus
mgf017136m
I
0.759
Cucsa.166340
Cucumis sativus
Cucsa.166340
I
0.758
PGSC0003DMG400014310
Solanum tuberosum
PGSC0003DMG400014310
I
0.758
TCM_016175
Theobroma cacao
TCM_016175
I
0.756
MLOC_75886
Hordeum vulgare
MLOC_75886
I
0.755
PGSC0003DMG400014309
Solanum tuberosum
PGSC0003DMG400014309
I
0.755
BRADI3G51630
Brachypodium distachyon
BRADI3G51630
I
0.755
MDP0000154764
Malus domestica
MDP0000154764
I
0.755
MDP0000198054
Malus domestica
MDP0000198054
I
0.754
MTR_6g466130
Medicago truncatula
MTR_6g466130
I
0.753
Pm023775
Prunus mume
Pm023775
I
0.752
GSMUA_Achr8G11980_001
Musa acuminata
GSMUA_Achr8G11980_001
I
0.752
PRUPE_ppa010800mg
Prunus persica
PRUPE_ppa010800mg
I
0.752
SapurV1A.0219s0320
Salix purpurea
SapurV1A.0219s0320
I
0.751
POPTR_0009s14990
Populus trichocarpa
POPTR_0009s14990
I
0.751
VIT_02s0025g04460
Vitis vinifera
VIT_02s0025g04460
I
0.750
DREB1G
Oryza indica
BGIOSGA008804
I
0.750
Pavir.Aa00912
Panicum virgatum
Pavir.Aa00912
I
0.750
DREB1G
Oryza sativa
OS02G0677300
D
0.750
LPERR02G22610
Leersia perrieri
LPERR02G22610
I
0.750
GRMZM2G137341
Zea mays
GRMZM2G137341
I
0.750
OBART02G27760
Oryza barthii
OBART02G27760
I
0.750
Pavir.Ab02685
Panicum virgatum
Pavir.Ab02685
I
0.750
Sb04g031950
Sorghum bicolor
Sb04g031950
I
0.750
ORUFI02G29230
Oryza rufipogon
ORUFI02G29230
I
0.750
OGLUM02G28340
Oryza glumaepatula
OGLUM02G28340
I
0.750
ONIVA02G30790
Oryza nivara
ONIVA02G30790
I
0.750
OMERI02G26980
Oryza meridionalis
OMERI02G26980
I
0.750
OPUNC02G25480
Oryza punctata
OPUNC02G25480
I
0.750
GSMUA_Achr11G21630_001
Musa acuminata
GSMUA_Achr11G21630_001
I
0.749
Carubv10006965m.g
Capsella rubella
Carubv10006965m.g
I
0.745
VIT_11s0016g02140
Vitis vinifera
VIT_11s0016g02140
I
0.745
Eucgr.A02818
Eucalyptus grandis
Eucgr.A02818
I
0.744
GLYMA10G38440
Glycine max
GLYMA10G38440
I
0.744
mgf019061m
Mimulus guttatus
mgf019061m
I
0.743
Aquca_012_00144
Aquilegia coerulea
Aquca_012_00144
I
0.743
Cucsa.302750
Cucumis sativus
Cucsa.302750
I
0.742
PRUPE_ppa010909mg
Prunus persica
PRUPE_ppa010909mg
I
0.742
Si018262m.g
Setaria italica
Si018262m.g
I
0.740
Ciclev10021923m.g
Citrus clementina
Ciclev10021923m.g
I
0.740
POPTR_0001s08710
Populus trichocarpa
POPTR_0001s08710
I
0.739
Pm023769
Prunus mume
Pm023769
I
0.737
Aquca_013_00435
Aquilegia coerulea
Aquca_013_00435
I
0.737
PRUPE_ppa021197mg
Prunus persica
PRUPE_ppa021197mg
I
0.737
GLYMA20G29410
Glycine max
GLYMA20G29410
I
0.737
orange1.1g028094m.g
Citrus sinensis
orange1.1g028094m.g
I
0.737
Ciclev10007068m.g
Citrus clementina
Ciclev10007068m.g
I
0.737
Aquca_013_00436
Aquilegia coerulea
Aquca_013_00436
I
0.735
PGSC0003DMG400012524
Solanum tuberosum
PGSC0003DMG400012524
I
0.734
Pm023772
Prunus mume
Pm023772
I
0.733
Solyc08g007820.1
Solanum lycopersicum
Solyc08g007820.1
I
0.731
60638.m00016
Ricinus communis
60638.m00016
I
0.731
30190.m011120
Ricinus communis
30190.m011120
I
0.729
MTR_6g465510
Medicago truncatula
MTR_6g465510
I
0.729
MTR_6g465530
Medicago truncatula
MTR_6g465530
I
0.729
evm.TU.supercontig_5.66
Carica papaya
evm.TU.supercontig_5.66
I
0.728
SapurV1A.0282s0070
Salix purpurea
SapurV1A.0282s0070
I
0.727
orange1.1g029015m.g
Citrus sinensis
orange1.1g029015m.g
I
0.727
PGSC0003DMG400012525
Solanum tuberosum
PGSC0003DMG400012525
I
0.727
POPTR_0001s08720
Populus trichocarpa
POPTR_0001s08720
I
0.727
MTR_6g466000
Medicago truncatula
MTR_6g466000
I
0.725
MTR_6g465690
Medicago truncatula
MTR_6g465690
I
0.725
GLYMA12G30740
Glycine max
GLYMA12G30740
I
0.724
MTR_1g101600
Medicago truncatula
MTR_1g101600
I
0.724
POPTR_0004s19820
Populus trichocarpa
POPTR_0004s19820
I
0.723
PGSC0003DMG400038366
Solanum tuberosum
PGSC0003DMG400038366
I
0.719
30190.m011119
Ricinus communis
30190.m011119
I
0.718
SapurV1A.0282s0080
Salix purpurea
SapurV1A.0282s0080
I
0.717
SapurV1A.0045s0710
Salix purpurea
SapurV1A.0045s0710
I
0.717
mgf026339m
Mimulus guttatus
mgf026339m
I
0.716
MTR_6g465460
Medicago truncatula
MTR_6g465460
I
0.714
DREB1B
Arabidopsis thaliana
AT4G25490
D
0.713
Pm019386
Prunus mume
Pm019386
I
0.713
Lus10029602.g
Linum usitatissimum
Lus10029602.g
I
0.712
Lus10006332.g
Linum usitatissimum
Lus10006332.g
I
0.712
Lus10029601.g
Linum usitatissimum
Lus10029601.g
I
0.712
Lus10006334.g
Linum usitatissimum
Lus10006334.g
I
0.712
Lus10001871.g
Linum usitatissimum
Lus10001871.g
I
0.712
LjSGA_037211.1
Lotus japonicus
LjSGA_037211.1
I
0.709
GLYMA13G39540
Glycine max
GLYMA13G39540
I
0.709
MTR_6g465450
Medicago truncatula
MTR_6g465450
I
0.708
PGSC0003DMG400004255
Solanum tuberosum
PGSC0003DMG400004255
I
0.708
Bra016763
Brassica rapa
Bra016763
I
0.707
MTR_8g006410
Medicago truncatula
MTR_8g006410
I
0.707
Bo01335s010
Brassica oleracea
Bo01335s010
I
0.707
MTR_6g465420
Medicago truncatula
MTR_6g465420
I
0.706
Thhalv10009978m.g
Eutrema salsugineum
Thhalv10009978m.g
I
0.706
MTR_6g465430
Medicago truncatula
MTR_6g465430
I
0.706
Solyc01g009440.1
Solanum lycopersicum
Solyc01g009440.1
I
0.705
Ca_04504
Cicer arietinum
Ca_04504
I
0.703
DDF1
Arabidopsis lyrata
fgenesh2_kg.1__1363__AT1G12610.1
D
0.703
DREB1F
Arabidopsis thaliana
AT1G12610
D
0.703
AMTR_s00095p00096190
Amborella trichopoda
AMTR_s00095p00096190
I
0.703
mgf016974m
Mimulus guttatus
mgf016974m
I
0.702
cassava17064.m1
Manihot esculenta
cassava17064.m1
I
0.702
mgf018631m
Mimulus guttatus
mgf018631m
I
0.702
mgf022408m
Mimulus guttatus
mgf022408m
I
0.702
mgf018934m
Mimulus guttatus
mgf018934m
I
0.702
ORUFI04G23890
Oryza rufipogon
ORUFI04G23890
I
0.701
OMERI04G18770
Oryza meridionalis
OMERI04G18770
I
0.701
ORGLA04G0192900
Oryza glaberrima
ORGLA04G0192900
I
0.701
ONIVA04G20840
Oryza nivara
ONIVA04G20840
I
0.701
OBART04G22220
Oryza barthii
OBART04G22220
I
0.701
DREB1E
Oryza indica
BGIOSGA016950
I
0.701
LPERR04G18190
Leersia perrieri
LPERR04G18190
I
0.701
DREB1E
Oryza sativa
OS04G0572400
D
0.701
OGLUM04G22260
Oryza glumaepatula
OGLUM04G22260
I
0.701
OPUNC04G19970
Oryza punctata
OPUNC04G19970
I
0.701
Bra026963
Brassica rapa
Bra026963
I
0.700
Bo8g108050
Brassica oleracea
Bo8g108050
I
0.700
Aquca_013_00434
Aquilegia coerulea
Aquca_013_00434
I
0.699
Bra022770
Brassica rapa
Bra022770
I
0.699
Aquca_122_00012
Aquilegia coerulea
Aquca_122_00012
I
0.698
PRUPE_ppa017761mg
Prunus persica
PRUPE_ppa017761mg
I
0.697
orange1.1g026103m.g
Citrus sinensis
orange1.1g026103m.g
I
0.697
Carubv10006809m.g
Capsella rubella
Carubv10006809m.g
I
0.697
Carubv10010303m.g
Capsella rubella
Carubv10010303m.g
I
0.696
Q8S2T3_BRANA
Brassica napus
Q8S2T3_BRANA
D
0.696
Bra019162
Brassica rapa
Bra019162
I
0.696
Cagra.0568s0171
Capsella grandiflora
Cagra.0568s0171
I
0.696
Bo7g110320
Brassica oleracea
Bo7g110320
I
0.696
Q6T3U0_BRANA
Brassica napus
Q6T3U0_BRANA
D
0.696
Lus10031657.g
Linum usitatissimum
Lus10031657.g
I
0.695
Eucgr.A02824
Eucalyptus grandis
Eucgr.A02824
I
0.694
Eucgr.A02826
Eucalyptus grandis
Eucgr.A02826
I
0.694
Eucgr.A02820
Eucalyptus grandis
Eucgr.A02820
I
0.694
Eucgr.A02832
Eucalyptus grandis
Eucgr.A02832
I
0.694
GSMUA_Achr7G05900_001
Musa acuminata
GSMUA_Achr7G05900_001
I
0.693
MTR_2g085015
Medicago truncatula
MTR_2g085015
I
0.693
Bostr.13671s0200
Boechera stricta
Bostr.13671s0200
I
0.693
Bra010460
Brassica rapa
Bra010460
I
0.692
Bo8g050800
Brassica oleracea
Bo8g050800
I
0.692
Cagra.2248s0025
Capsella grandiflora
Cagra.2248s0025
I
0.692
Lus10027412.g
Linum usitatissimum
Lus10027412.g
I
0.692
Aquca_122_00013
Aquilegia coerulea
Aquca_122_00013
I
0.691
Eucgr.A02822
Eucalyptus grandis
Eucgr.A02822
I
0.690
GRMZM2G042756
Zea mays
GRMZM2G042756
I
0.689
Si011005m.g
Setaria italica
Si011005m.g
I
0.689
Sb06g025900
Sorghum bicolor
Sb06g025900
I
0.689
VIT_06s0061g01400
Vitis vinifera
VIT_06s0061g01400
I
0.688
Eucgr.A02831
Eucalyptus grandis
Eucgr.A02831
I
0.688
Pavir.Ga00931
Panicum virgatum
Pavir.Ga00931
I
0.687
Ca_18948
Cicer arietinum
Ca_18948
I
0.687
MTR_5g010930
Medicago truncatula
MTR_5g010930
I
0.685
MTR_6g465850
Medicago truncatula
MTR_6g465850
I
0.685
Eucgr.A02827
Eucalyptus grandis
Eucgr.A02827
I
0.684
Eucgr.A02834
Eucalyptus grandis
Eucgr.A02834
I
0.684
Eucgr.A02821
Eucalyptus grandis
Eucgr.A02821
I
0.683
ddf2
Arabidopsis lyrata
fgenesh2_kg.2__175__AT1G63030.1
D
0.681
Bostr.22157s0019
Boechera stricta
Bostr.22157s0019
I
0.681
Thhalv10023865m.g
Eutrema salsugineum
Thhalv10023865m.g
I
0.681
GLYMA17G14111
Glycine max
GLYMA17G14111
I
0.681
chr3.LjT42M03.60.nd
Lotus japonicus
chr3.LjT42M03.60.nd
I
0.681
AMTR_s00069p00141520
Amborella trichopoda
AMTR_s00069p00141520
I
0.680
GLYMA16G32330
Glycine max
GLYMA16G32330
I
0.679
GSMUA_Achr10G15510_001
Musa acuminata
GSMUA_Achr10G15510_001
I
0.678
Lus10017829.g
Linum usitatissimum
Lus10017829.g
I
0.678
cassava41218.m1
Manihot esculenta
cassava41218.m1
I
0.677