Bo8g108050 (Brassica oleracea)
AP2

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00847 (AP2) IPR001471 Bo8g108050 T000944_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
DREB1F
M00962_2.00 		Arabidopsis thaliana
NRCCGACNN
NNGTCGGYN		 PBM
LehtiShiu et al.(2015)
DDF1_Arabidopsis_thaliana 		0.839 0.920
DREB1F
M00840_2.00 		Arabidopsis thaliana
NRYCGACNN
NNGTCGRYN		 PBM
Franco-Zorrilla et al.(2014)
DDF1 		0.839 0.920
DDF1
M00964_2.00 		Arabidopsis lyrata
NRYCGACDY
RHGTCGRYN		 PBM
LehtiShiu et al.(2015)
DDF1_Arabidopsis_lyrata 		0.839 0.920
DREB1F
M06564_2.00 		Arabidopsis thaliana
NHNHYGYCGACATNN
NNATGTCGRCRDNDN		 Dap-seq
OMalley et al.(2016)
DDF1_col_a 		0.839 0.920
DREB1F
M06565_2.00 		Arabidopsis thaliana
HNDNNRYCGACAH
DTGTCGRYNNHND		 Dap-seq
OMalley et al.(2016)
DDF1_colamp_a 		0.839 0.920
DREB1F
M09701_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$DREB1F_03 		0.839 0.920
ddf2
M00965_2.00 		Arabidopsis lyrata
NRYCGACAT
ATGTCGRYN		 PBM
LehtiShiu et al.(2015)
DDF2_Arabidopsis_lyrata 		0.775 0.800
DREB1E
M00963_2.00 		Arabidopsis thaliana
NRYCGACAT
ATGTCGRYN		 PBM
LehtiShiu et al.(2015)
DDF2_Arabidopsis_thaliana 		0.710 0.760
DREB1E
M06589_2.00 		Arabidopsis thaliana
NNNYYGYCGACATVD
HBATGTCGRCRRNNN		 Dap-seq
OMalley et al.(2016)
DDF2_col_a 		0.710 0.760
DREB1E
M09702_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$DREB1E_03 		0.710 0.760
DREB1A
M01624_2.00 		Arabidopsis thaliana
NRCCGACNNN
NNNGTCGGYN		 PBM
Weirauch et al.(2014)
pTH8163 		0.700 0.760
DREB1A
M01625_2.00 		Arabidopsis thaliana
NNRCCGACNW
WNGTCGGYNN		 PBM
Weirauch et al.(2014)
pTH9718 		0.700 0.760
DREB1A
M06641_2.00 		Arabidopsis thaliana
HNYBRCCGACDWNN
NNWHGTCGGYVRND		 Dap-seq
OMalley et al.(2016)
CBF3_col_a 		0.700 0.760
DREB1A
M06642_2.00 		Arabidopsis thaliana
YBRCCGACATN
NATGTCGGYVR		 Dap-seq
OMalley et al.(2016)
CBF3_colamp_a 		0.700 0.760
DREB1D
M06678_2.00 		Arabidopsis thaliana
NHBRCCGACRTNN
NNAYGTCGGYVDN		 Dap-seq
OMalley et al.(2016)
CBF4_col_a 		0.698 0.760
DREB1D
M06679_2.00 		Arabidopsis thaliana
HYRCCGACATND
HNATGTCGGYRD		 Dap-seq
OMalley et al.(2016)
CBF4_colamp_a 		0.698 0.760
DREB1G
M01635_2.00 		Oryza sativa
NYGCCGACAN
NTGTCGGCRN		 PBM
Weirauch et al.(2014)
pTH8352 		0.684 0.720
DREB1G
M09707_2.00 		Oryza sativa Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$DREB1G_01 		0.684 0.720
For this family, TFs with SR scores > 0.677 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Bo8g108050.1 AP2 29 80

Links

Other AP2 family TFs
Other Brassica oleracea TFs

147 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Bra026963 Brassica rapa Bra026963 I 0.869
Thhalv10009978m.g Eutrema salsugineum Thhalv10009978m.g I 0.842
DREB1F Arabidopsis thaliana AT1G12610 D 0.839
DDF1 Arabidopsis lyrata fgenesh2_kg.1__1363__AT1G12610.1 D 0.839
Bo01335s010 Brassica oleracea Bo01335s010 I 0.835
Bra016763 Brassica rapa Bra016763 I 0.835
Cagra.0568s0171 Capsella grandiflora Cagra.0568s0171 I 0.832
Carubv10010303m.g Capsella rubella Carubv10010303m.g I 0.832
Bostr.13671s0200 Boechera stricta Bostr.13671s0200 I 0.829
Bo5g016750 Brassica oleracea Bo5g016750 I 0.798
GSMUA_Achr11G21630_001 Musa acuminata GSMUA_Achr11G21630_001 I 0.776
ddf2 Arabidopsis lyrata fgenesh2_kg.2__175__AT1G63030.1 D 0.775
Bostr.22157s0019 Boechera stricta Bostr.22157s0019 I 0.775
Thhalv10023865m.g Eutrema salsugineum Thhalv10023865m.g I 0.775
cassava41192.m1 Manihot esculenta cassava41192.m1 I 0.773
mgf019061m Mimulus guttatus mgf019061m I 0.769
mgf017136m Mimulus guttatus mgf017136m I 0.767
PGSC0003DMG400012525 Solanum tuberosum PGSC0003DMG400012525 I 0.763
VIT_02s0025g04460 Vitis vinifera VIT_02s0025g04460 I 0.763
Cagra.23885s0001 Capsella grandiflora Cagra.23885s0001 I 0.757
Carubv10021910m.g Capsella rubella Carubv10021910m.g I 0.757
POPTR_0001s08710 Populus trichocarpa POPTR_0001s08710 I 0.752
60638.m00016 Ricinus communis 60638.m00016 I 0.750
cassava17064.m1 Manihot esculenta cassava17064.m1 I 0.748
GSMUA_Achr8G11980_001 Musa acuminata GSMUA_Achr8G11980_001 I 0.747
POPTR_0001s08720 Populus trichocarpa POPTR_0001s08720 I 0.745
SapurV1A.0282s0070 Salix purpurea SapurV1A.0282s0070 I 0.745
GLYMA09G27180 Glycine max GLYMA09G27180 I 0.743
PGSC0003DMG400004255 Solanum tuberosum PGSC0003DMG400004255 I 0.743
Lus10001871.g Linum usitatissimum Lus10001871.g I 0.741
Lus10006332.g Linum usitatissimum Lus10006332.g I 0.741
Lus10006334.g Linum usitatissimum Lus10006334.g I 0.741
Lus10029601.g Linum usitatissimum Lus10029601.g I 0.741
Lus10029602.g Linum usitatissimum Lus10029602.g I 0.741
Ciclev10021923m.g Citrus clementina Ciclev10021923m.g I 0.738
Bra019777 Brassica rapa Bra019777 I 0.737
GLYMA12G30740 Glycine max GLYMA12G30740 I 0.737
Solyc08g007820.1 Solanum lycopersicum Solyc08g007820.1 I 0.736
Cla011674 Citrullus lanatus Cla011674 I 0.736
gene32378-v1.0-hybrid Fragaria vesca gene32378-v1.0-hybrid I 0.733
Bra027612 Brassica rapa Bra027612 I 0.732
Eucgr.D01925 Eucalyptus grandis Eucgr.D01925 I 0.732
MDP0000154764 Malus domestica MDP0000154764 I 0.732
PGSC0003DMG400012524 Solanum tuberosum PGSC0003DMG400012524 I 0.731
30190.m011119 Ricinus communis 30190.m011119 I 0.731
SapurV1A.0045s0710 Salix purpurea SapurV1A.0045s0710 I 0.731
SapurV1A.0282s0080 Salix purpurea SapurV1A.0282s0080 I 0.731
POPTR_0012s13870 Populus trichocarpa POPTR_0012s13870 I 0.730
cassava35062.m1 Manihot esculenta cassava35062.m1 I 0.730
mgf026642m Mimulus guttatus mgf026642m I 0.730
Cagra.2248s0026 Capsella grandiflora Cagra.2248s0026 I 0.730
gene13329-v1.0-hybrid Fragaria vesca gene13329-v1.0-hybrid I 0.730
Gorai.007G010100 Gossypium raimondii Gorai.007G010100 I 0.730
PK23332.1 Cannabis sativa PK23332.1 I 0.730
PRUPE_ppa010800mg Prunus persica PRUPE_ppa010800mg I 0.729
Pm023775 Prunus mume Pm023775 I 0.729
Gorai.008G243600 Gossypium raimondii Gorai.008G243600 I 0.729
POPTR_0009s14990 Populus trichocarpa POPTR_0009s14990 I 0.728
SapurV1A.0219s0320 Salix purpurea SapurV1A.0219s0320 I 0.728
LjSGA_037211.1 Lotus japonicus LjSGA_037211.1 I 0.728
PRUPE_ppa021197mg Prunus persica PRUPE_ppa021197mg I 0.727
Pm023769 Prunus mume Pm023769 I 0.727
Bostr.7867s0360 Boechera stricta Bostr.7867s0360 I 0.727
Thhalv10027405m.g Eutrema salsugineum Thhalv10027405m.g I 0.727
PRUPE_ppa010909mg Prunus persica PRUPE_ppa010909mg I 0.725
POPTR_0015s13830 Populus trichocarpa POPTR_0015s13830 I 0.724
Cucsa.251030 Cucumis sativus Cucsa.251030 I 0.724
GLYMA13G39540 Glycine max GLYMA13G39540 I 0.722
Cla006315 Citrullus lanatus Cla006315 I 0.722
MDP0000198054 Malus domestica MDP0000198054 I 0.720
Pm023772 Prunus mume Pm023772 I 0.719
VIT_16s0100g00380 Vitis vinifera VIT_16s0100g00380 I 0.718
Eucgr.E00529 Eucalyptus grandis Eucgr.E00529 I 0.718
PRUPE_ppa010935mg Prunus persica PRUPE_ppa010935mg I 0.717
evm.TU.supercontig_74.84 Carica papaya evm.TU.supercontig_74.84 I 0.716
Solyc03g124110.1 Solanum lycopersicum Solyc03g124110.1 I 0.713
TCM_016175 Theobroma cacao TCM_016175 I 0.713
MTR_6g466130 Medicago truncatula MTR_6g466130 I 0.712
VIT_11s0016g02140 Vitis vinifera VIT_11s0016g02140 I 0.711
Cucsa.302750 Cucumis sativus Cucsa.302750 I 0.711
DREB1E Arabidopsis thaliana AT1G63030 D 0.710
Solyc03g026280.2 Solanum lycopersicum Solyc03g026280.2 I 0.710
Solyc03g026270.1 Solanum lycopersicum Solyc03g026270.1 I 0.708
Lus10017829.g Linum usitatissimum Lus10017829.g I 0.708
SapurV1A.0068s0560 Salix purpurea SapurV1A.0068s0560 I 0.708
SapurV1A.0400s0160 Salix purpurea SapurV1A.0400s0160 I 0.708
POPTR_0004s19820 Populus trichocarpa POPTR_0004s19820 I 0.707
30190.m011120 Ricinus communis 30190.m011120 I 0.706
Solyc08g007830.1 Solanum lycopersicum Solyc08g007830.1 I 0.703
30147.m014313 Ricinus communis 30147.m014313 I 0.703
cassava18935.valid.m1 Manihot esculenta cassava18935.valid.m1 I 0.701
DREB1A Arabidopsis thaliana AT4G25480 D 0.700
CBF2 Arabidopsis lyrata fgenesh2_kg.7__1712__AT4G25470.1 I 0.700
MTR_2g085015 Medicago truncatula MTR_2g085015 I 0.700
Bostr.7867s0359 Boechera stricta Bostr.7867s0359 I 0.700
Bostr.7867s0361 Boechera stricta Bostr.7867s0361 I 0.700
Cagra.28753s0001 Capsella grandiflora Cagra.28753s0001 I 0.700
Carubv10005709m.g Capsella rubella Carubv10005709m.g I 0.700
Aquca_122_00013 Aquilegia coerulea Aquca_122_00013 I 0.699
evm.TU.supercontig_5.66 Carica papaya evm.TU.supercontig_5.66 I 0.699
DREB1D Arabidopsis thaliana AT5G51990 D 0.698
Bo9g104770 Brassica oleracea Bo9g104770 I 0.698
Bra028290 Brassica rapa Bra028290 I 0.698
GLYMA11G19341 Glycine max GLYMA11G19341 I 0.698
CBF4 Arabidopsis lyrata scaffold_801637.1 I 0.698
Cla002362 Citrullus lanatus Cla002362 I 0.698
Bostr.15774s0346 Boechera stricta Bostr.15774s0346 I 0.698
Cagra.0094s0011 Capsella grandiflora Cagra.0094s0011 I 0.698
Carubv10027759m.g Capsella rubella Carubv10027759m.g I 0.698
Thhalv10015252m.g Eutrema salsugineum Thhalv10015252m.g I 0.698
orange1.1g026103m.g Citrus sinensis orange1.1g026103m.g I 0.695
MTR_6g465510 Medicago truncatula MTR_6g465510 I 0.694
PRUPE_ppa017761mg Prunus persica PRUPE_ppa017761mg I 0.694
MTR_6g465460 Medicago truncatula MTR_6g465460 I 0.692
PGSC0003DMG400014309 Solanum tuberosum PGSC0003DMG400014309 I 0.692
MTR_6g465690 Medicago truncatula MTR_6g465690 I 0.691
MTR_6g466000 Medicago truncatula MTR_6g466000 I 0.691
PGSC0003DMG400038366 Solanum tuberosum PGSC0003DMG400038366 I 0.690
PGSC0003DMG400014310 Solanum tuberosum PGSC0003DMG400014310 I 0.689
PGSC0003DMG400014311 Solanum tuberosum PGSC0003DMG400014311 I 0.687
BRADI3G51630 Brachypodium distachyon BRADI3G51630 I 0.686
MLOC_75886 Hordeum vulgare MLOC_75886 I 0.686
orange1.1g029015m.g Citrus sinensis orange1.1g029015m.g I 0.686
DREB1G Oryza indica BGIOSGA008804 I 0.684
GRMZM2G137341 Zea mays GRMZM2G137341 I 0.684
LPERR02G22610 Leersia perrieri LPERR02G22610 I 0.684
MTR_6g465420 Medicago truncatula MTR_6g465420 I 0.684
MTR_6g465430 Medicago truncatula MTR_6g465430 I 0.684
OBART02G27760 Oryza barthii OBART02G27760 I 0.684
OGLUM02G28340 Oryza glumaepatula OGLUM02G28340 I 0.684
OMERI02G26980 Oryza meridionalis OMERI02G26980 I 0.684
ONIVA02G30790 Oryza nivara ONIVA02G30790 I 0.684
OPUNC02G25480 Oryza punctata OPUNC02G25480 I 0.684
ORUFI02G29230 Oryza rufipogon ORUFI02G29230 I 0.684
DREB1G Oryza sativa OS02G0677300 D 0.684
Sb04g031950 Sorghum bicolor Sb04g031950 I 0.684
Carubv10006965m.g Capsella rubella Carubv10006965m.g I 0.684
Gorai.006G046200 Gossypium raimondii Gorai.006G046200 I 0.684
Pavir.Aa00912 Panicum virgatum Pavir.Aa00912 I 0.684
Pavir.Ab02685 Panicum virgatum Pavir.Ab02685 I 0.684
MTR_6g465450 Medicago truncatula MTR_6g465450 I 0.683
AMTR_s00095p00096190 Amborella trichopoda AMTR_s00095p00096190 I 0.681
VIT_06s0061g01400 Vitis vinifera VIT_06s0061g01400 I 0.681
Solyc01g009440.1 Solanum lycopersicum Solyc01g009440.1 I 0.680
Aquca_122_00012 Aquilegia coerulea Aquca_122_00012 I 0.679
GLYMA17G14111 Glycine max GLYMA17G14111 I 0.677
mgf026339m Mimulus guttatus mgf026339m I 0.677