Solyc03g124110.1 (Solanum lycopersicum)
AP2

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00847 (AP2) IPR001471 Solyc03g124110.1 T005449_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
DREB1D
M06678_2.00 		Arabidopsis thaliana
NHBRCCGACRTNN
NNAYGTCGGYVDN		 Dap-seq
OMalley et al.(2016)
CBF4_col_a 		0.789 0.900
DREB1D
M06679_2.00 		Arabidopsis thaliana
HYRCCGACATND
HNATGTCGGYRD		 Dap-seq
OMalley et al.(2016)
CBF4_colamp_a 		0.789 0.900
DREB1A
M01624_2.00 		Arabidopsis thaliana
NRCCGACNNN
NNNGTCGGYN		 PBM
Weirauch et al.(2014)
pTH8163 		0.778 0.900
DREB1A
M01625_2.00 		Arabidopsis thaliana
NNRCCGACNW
WNGTCGGYNN		 PBM
Weirauch et al.(2014)
pTH9718 		0.778 0.900
DREB1A
M06641_2.00 		Arabidopsis thaliana
HNYBRCCGACDWNN
NNWHGTCGGYVRND		 Dap-seq
OMalley et al.(2016)
CBF3_col_a 		0.778 0.900
DREB1A
M06642_2.00 		Arabidopsis thaliana
YBRCCGACATN
NATGTCGGYVR		 Dap-seq
OMalley et al.(2016)
CBF3_colamp_a 		0.778 0.900
DREB1C
M01623_2.00 		Arabidopsis thaliana
RCCGACAT
ATGTCGGY		 PBM
Weirauch et al.(2014)
pTH8187 		0.778 0.900
DREB1C
M06639_2.00 		Arabidopsis thaliana
NNNHBRCCGACATNN
NNATGTCGGYVDNNN		 Dap-seq
OMalley et al.(2016)
CBF2_col_a 		0.778 0.900
DREB1C
M06640_2.00 		Arabidopsis thaliana
NYBRCCGACATVN
NBATGTCGGYVRN		 Dap-seq
OMalley et al.(2016)
CBF2_colamp_a 		0.778 0.900
DREB1G
M01635_2.00 		Oryza sativa
NYGCCGACAN
NTGTCGGCRN		 PBM
Weirauch et al.(2014)
pTH8352 		0.710 0.780
DREB1G
M09707_2.00 		Oryza sativa Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$DREB1G_01 		0.710 0.780
DREB1F
M00962_2.00 		Arabidopsis thaliana
NRCCGACNN
NNGTCGGYN		 PBM
LehtiShiu et al.(2015)
DDF1_Arabidopsis_thaliana 		0.710 0.780
DREB1F
M00840_2.00 		Arabidopsis thaliana
NRYCGACNN
NNGTCGRYN		 PBM
Franco-Zorrilla et al.(2014)
DDF1 		0.710 0.780
DDF1
M00964_2.00 		Arabidopsis lyrata
NRYCGACDY
RHGTCGRYN		 PBM
LehtiShiu et al.(2015)
DDF1_Arabidopsis_lyrata 		0.710 0.780
DREB1F
M06564_2.00 		Arabidopsis thaliana
NHNHYGYCGACATNN
NNATGTCGRCRDNDN		 Dap-seq
OMalley et al.(2016)
DDF1_col_a 		0.710 0.780
DREB1F
M06565_2.00 		Arabidopsis thaliana
HNDNNRYCGACAH
DTGTCGRYNNHND		 Dap-seq
OMalley et al.(2016)
DDF1_colamp_a 		0.710 0.780
DREB1F
M09701_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$DREB1F_03 		0.710 0.780
Q8S2T3_BRANA
M09745_2.00 		Brassica napus Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$CBF16_01 		0.697 0.880
Q6T3U0_BRANA
M09743_2.00 		Brassica napus Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$DREBII1_01 		0.697 0.880
DREB1E
M09709_2.00 		Oryza sativa Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$DREB1E_01 		0.693 0.800
DREB1B
M06643_2.00 		Arabidopsis thaliana
DHBRCCGACRHN
NDYGTCGGYVDH		 Dap-seq
OMalley et al.(2016)
CBF1_col_a 		0.679 0.880
DREB1B
M06644_2.00 		Arabidopsis thaliana
NNNHBRCCGACAWNN
NNWTGTCGGYVDNNN		 Dap-seq
OMalley et al.(2016)
CBF1_colamp_a 		0.679 0.880
For this family, TFs with SR scores > 0.677 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Solyc03g124110.1.1 AP2 61 112

Links

Other AP2 family TFs
Other Solanum lycopersicum TFs

199 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Solyc03g026270.1 Solanum lycopersicum Solyc03g026270.1 I 0.836
Solyc03g026280.2 Solanum lycopersicum Solyc03g026280.2 I 0.831
gene13329-v1.0-hybrid Fragaria vesca gene13329-v1.0-hybrid I 0.814
PK23332.1 Cannabis sativa PK23332.1 I 0.814
mgf026642m Mimulus guttatus mgf026642m I 0.808
Cagra.2248s0026 Capsella grandiflora Cagra.2248s0026 I 0.806
Cla002362 Citrullus lanatus Cla002362 I 0.804
Bostr.7867s0360 Boechera stricta Bostr.7867s0360 I 0.803
Thhalv10027405m.g Eutrema salsugineum Thhalv10027405m.g I 0.803
PRUPE_ppa010935mg Prunus persica PRUPE_ppa010935mg I 0.802
Cucsa.251030 Cucumis sativus Cucsa.251030 I 0.801
POPTR_0012s13870 Populus trichocarpa POPTR_0012s13870 I 0.800
cassava35062.m1 Manihot esculenta cassava35062.m1 I 0.800
Gorai.007G010100 Gossypium raimondii Gorai.007G010100 I 0.800
Cla006315 Citrullus lanatus Cla006315 I 0.799
POPTR_0015s13830 Populus trichocarpa POPTR_0015s13830 I 0.794
PGSC0003DMG400014311 Solanum tuberosum PGSC0003DMG400014311 I 0.793
cassava18935.valid.m1 Manihot esculenta cassava18935.valid.m1 I 0.792
GLYMA09G27180 Glycine max GLYMA09G27180 I 0.791
DREB1D Arabidopsis thaliana AT5G51990 D 0.789
Bo9g104770 Brassica oleracea Bo9g104770 I 0.789
Bra028290 Brassica rapa Bra028290 I 0.789
CBF4 Arabidopsis lyrata scaffold_801637.1 I 0.789
Bostr.15774s0346 Boechera stricta Bostr.15774s0346 I 0.789
Cagra.0094s0011 Capsella grandiflora Cagra.0094s0011 I 0.789
Carubv10027759m.g Capsella rubella Carubv10027759m.g I 0.789
Thhalv10015252m.g Eutrema salsugineum Thhalv10015252m.g I 0.789
Eucgr.D01925 Eucalyptus grandis Eucgr.D01925 I 0.786
CBF2 Arabidopsis lyrata fgenesh2_kg.7__1712__AT4G25470.1 I 0.785
PGSC0003DMG400014309 Solanum tuberosum PGSC0003DMG400014309 I 0.783
Cucsa.166340 Cucumis sativus Cucsa.166340 I 0.782
PGSC0003DMG400014310 Solanum tuberosum PGSC0003DMG400014310 I 0.780
DREB1C Arabidopsis thaliana AT4G25470 D 0.778
DREB1A Arabidopsis thaliana AT4G25480 D 0.778
POPTR_0001s08710 Populus trichocarpa POPTR_0001s08710 I 0.778
SapurV1A.0068s0560 Salix purpurea SapurV1A.0068s0560 I 0.778
SapurV1A.0400s0160 Salix purpurea SapurV1A.0400s0160 I 0.778
Bostr.7867s0359 Boechera stricta Bostr.7867s0359 I 0.777
Bostr.7867s0361 Boechera stricta Bostr.7867s0361 I 0.777
Cagra.28753s0001 Capsella grandiflora Cagra.28753s0001 I 0.777
Carubv10005709m.g Capsella rubella Carubv10005709m.g I 0.777
MTR_1g101600 Medicago truncatula MTR_1g101600 I 0.776
30147.m014313 Ricinus communis 30147.m014313 I 0.773
MTR_6g465510 Medicago truncatula MTR_6g465510 I 0.772
Eucgr.E00529 Eucalyptus grandis Eucgr.E00529 I 0.772
gene32378-v1.0-hybrid Fragaria vesca gene32378-v1.0-hybrid I 0.771
MTR_6g465690 Medicago truncatula MTR_6g465690 I 0.768
MTR_6g466000 Medicago truncatula MTR_6g466000 I 0.768
VIT_16s0100g00380 Vitis vinifera VIT_16s0100g00380 I 0.764
Cla011674 Citrullus lanatus Cla011674 I 0.763
evm.TU.supercontig_74.84 Carica papaya evm.TU.supercontig_74.84 I 0.761
Gorai.006G046200 Gossypium raimondii Gorai.006G046200 I 0.761
POPTR_0001s08720 Populus trichocarpa POPTR_0001s08720 I 0.760
Cucsa.302750 Cucumis sativus Cucsa.302750 I 0.760
SapurV1A.0282s0070 Salix purpurea SapurV1A.0282s0070 I 0.760
MTR_6g465430 Medicago truncatula MTR_6g465430 I 0.758
MTR_6g465460 Medicago truncatula MTR_6g465460 I 0.757
cassava41192.m1 Manihot esculenta cassava41192.m1 I 0.756
Gorai.008G243600 Gossypium raimondii Gorai.008G243600 I 0.756
SapurV1A.0045s0710 Salix purpurea SapurV1A.0045s0710 I 0.756
SapurV1A.0282s0080 Salix purpurea SapurV1A.0282s0080 I 0.756
MTR_6g465530 Medicago truncatula MTR_6g465530 I 0.755
Ca_04504 Cicer arietinum Ca_04504 I 0.755
mgf017136m Mimulus guttatus mgf017136m I 0.755
mgf026339m Mimulus guttatus mgf026339m I 0.752
Lus10001871.g Linum usitatissimum Lus10001871.g I 0.751
Lus10006332.g Linum usitatissimum Lus10006332.g I 0.751
Lus10006334.g Linum usitatissimum Lus10006334.g I 0.751
Lus10029601.g Linum usitatissimum Lus10029601.g I 0.751
Lus10029602.g Linum usitatissimum Lus10029602.g I 0.751
MDP0000154764 Malus domestica MDP0000154764 I 0.751
MDP0000198054 Malus domestica MDP0000198054 I 0.750
MTR_6g465420 Medicago truncatula MTR_6g465420 I 0.749
MTR_6g466130 Medicago truncatula MTR_6g466130 I 0.749
GSMUA_Achr11G21630_001 Musa acuminata GSMUA_Achr11G21630_001 I 0.748
PRUPE_ppa010800mg Prunus persica PRUPE_ppa010800mg I 0.748
Pm023775 Prunus mume Pm023775 I 0.748
Carubv10006965m.g Capsella rubella Carubv10006965m.g I 0.748
GLYMA20G29410 Glycine max GLYMA20G29410 I 0.747
MTR_6g465450 Medicago truncatula MTR_6g465450 I 0.747
PGSC0003DMG400004255 Solanum tuberosum PGSC0003DMG400004255 I 0.747
30190.m011120 Ricinus communis 30190.m011120 I 0.747
Ciclev10007068m.g Citrus clementina Ciclev10007068m.g I 0.747
orange1.1g028094m.g Citrus sinensis orange1.1g028094m.g I 0.747
MTR_8g006410 Medicago truncatula MTR_8g006410 I 0.746
TCM_016175 Theobroma cacao TCM_016175 I 0.746
VIT_02s0025g04460 Vitis vinifera VIT_02s0025g04460 I 0.746
Aquca_012_00144 Aquilegia coerulea Aquca_012_00144 I 0.742
GLYMA12G30740 Glycine max GLYMA12G30740 I 0.741
GLYMA10G38440 Glycine max GLYMA10G38440 I 0.740
Eucgr.A02818 Eucalyptus grandis Eucgr.A02818 I 0.740
mgf019061m Mimulus guttatus mgf019061m I 0.739
orange1.1g029015m.g Citrus sinensis orange1.1g029015m.g I 0.738
PRUPE_ppa010909mg Prunus persica PRUPE_ppa010909mg I 0.737
POPTR_0004s19820 Populus trichocarpa POPTR_0004s19820 I 0.736
PRUPE_ppa021197mg Prunus persica PRUPE_ppa021197mg I 0.733
Pm023769 Prunus mume Pm023769 I 0.733
Pm023772 Prunus mume Pm023772 I 0.729
Ciclev10021923m.g Citrus clementina Ciclev10021923m.g I 0.729
GLYMA13G39540 Glycine max GLYMA13G39540 I 0.727
Aquca_013_00435 Aquilegia coerulea Aquca_013_00435 I 0.725
PGSC0003DMG400012525 Solanum tuberosum PGSC0003DMG400012525 I 0.723
Aquca_013_00436 Aquilegia coerulea Aquca_013_00436 I 0.723
Pm019386 Prunus mume Pm019386 I 0.722
60638.m00016 Ricinus communis 60638.m00016 I 0.720
mgf016974m Mimulus guttatus mgf016974m I 0.719
mgf018631m Mimulus guttatus mgf018631m I 0.719
mgf018934m Mimulus guttatus mgf018934m I 0.719
mgf022408m Mimulus guttatus mgf022408m I 0.719
GSMUA_Achr8G11980_001 Musa acuminata GSMUA_Achr8G11980_001 I 0.718
BRADI3G51630 Brachypodium distachyon BRADI3G51630 I 0.715
MLOC_75886 Hordeum vulgare MLOC_75886 I 0.715
POPTR_0009s14990 Populus trichocarpa POPTR_0009s14990 I 0.715
SapurV1A.0219s0320 Salix purpurea SapurV1A.0219s0320 I 0.715
Bo01335s010 Brassica oleracea Bo01335s010 I 0.714
Bra016763 Brassica rapa Bra016763 I 0.714
30190.m011119 Ricinus communis 30190.m011119 I 0.714
Bo8g108050 Brassica oleracea Bo8g108050 I 0.713
Bra026963 Brassica rapa Bra026963 I 0.713
Thhalv10009978m.g Eutrema salsugineum Thhalv10009978m.g I 0.712
Solyc01g009440.1 Solanum lycopersicum Solyc01g009440.1 I 0.711
Eucgr.A02820 Eucalyptus grandis Eucgr.A02820 I 0.711
Eucgr.A02824 Eucalyptus grandis Eucgr.A02824 I 0.711
Eucgr.A02826 Eucalyptus grandis Eucgr.A02826 I 0.711
Eucgr.A02832 Eucalyptus grandis Eucgr.A02832 I 0.711
chr3.LjT42M03.60.nd Lotus japonicus chr3.LjT42M03.60.nd I 0.711
DREB1F Arabidopsis thaliana AT1G12610 D 0.710
DREB1G Oryza indica BGIOSGA008804 I 0.710
DDF1 Arabidopsis lyrata fgenesh2_kg.1__1363__AT1G12610.1 D 0.710
GRMZM2G137341 Zea mays GRMZM2G137341 I 0.710
LPERR02G22610 Leersia perrieri LPERR02G22610 I 0.710
MTR_6g465850 Medicago truncatula MTR_6g465850 I 0.710
OBART02G27760 Oryza barthii OBART02G27760 I 0.710
OGLUM02G28340 Oryza glumaepatula OGLUM02G28340 I 0.710
OMERI02G26980 Oryza meridionalis OMERI02G26980 I 0.710
ONIVA02G30790 Oryza nivara ONIVA02G30790 I 0.710
OPUNC02G25480 Oryza punctata OPUNC02G25480 I 0.710
ORUFI02G29230 Oryza rufipogon ORUFI02G29230 I 0.710
DREB1G Oryza sativa OS02G0677300 D 0.710
Sb04g031950 Sorghum bicolor Sb04g031950 I 0.710
cassava41218.m1 Manihot esculenta cassava41218.m1 I 0.710
Pavir.Aa00912 Panicum virgatum Pavir.Aa00912 I 0.710
Pavir.Ab02685 Panicum virgatum Pavir.Ab02685 I 0.710
orange1.1g026103m.g Citrus sinensis orange1.1g026103m.g I 0.708
Eucgr.A02822 Eucalyptus grandis Eucgr.A02822 I 0.707
Lus10031657.g Linum usitatissimum Lus10031657.g I 0.706
Ca_18948 Cicer arietinum Ca_18948 I 0.705
Eucgr.A02831 Eucalyptus grandis Eucgr.A02831 I 0.705
LjSGA_037211.1 Lotus japonicus LjSGA_037211.1 I 0.705
MTR_2g085015 Medicago truncatula MTR_2g085015 I 0.704
Lus10027412.g Linum usitatissimum Lus10027412.g I 0.703
Cagra.0568s0171 Capsella grandiflora Cagra.0568s0171 I 0.702
Carubv10010303m.g Capsella rubella Carubv10010303m.g I 0.702
Eucgr.A02821 Eucalyptus grandis Eucgr.A02821 I 0.701
Eucgr.A02827 Eucalyptus grandis Eucgr.A02827 I 0.701
Eucgr.A02834 Eucalyptus grandis Eucgr.A02834 I 0.701
AMTR_s00095p00096190 Amborella trichopoda AMTR_s00095p00096190 I 0.700
Si018262m.g Setaria italica Si018262m.g I 0.700
Ca_08732 Cicer arietinum Ca_08732 I 0.700
Bostr.13671s0200 Boechera stricta Bostr.13671s0200 I 0.699
cassava17064.m1 Manihot esculenta cassava17064.m1 I 0.698
Bo7g110320 Brassica oleracea Bo7g110320 I 0.697
Bra019162 Brassica rapa Bra019162 I 0.697
Solyc08g007820.1 Solanum lycopersicum Solyc08g007820.1 I 0.697
Q6T3U0_BRANA Brassica napus Q6T3U0_BRANA D 0.697
Q8S2T3_BRANA Brassica napus Q8S2T3_BRANA D 0.697
VIT_11s0016g02140 Vitis vinifera VIT_11s0016g02140 I 0.695
evm.TU.supercontig_5.66 Carica papaya evm.TU.supercontig_5.66 I 0.695
Bra022770 Brassica rapa Bra022770 I 0.694
PGSC0003DMG400012524 Solanum tuberosum PGSC0003DMG400012524 I 0.694
DREB1E Oryza indica BGIOSGA016950 I 0.693
LPERR04G18190 Leersia perrieri LPERR04G18190 I 0.693
OBART04G22220 Oryza barthii OBART04G22220 I 0.693
OGLUM04G22260 Oryza glumaepatula OGLUM04G22260 I 0.693
OMERI04G18770 Oryza meridionalis OMERI04G18770 I 0.693
ONIVA04G20840 Oryza nivara ONIVA04G20840 I 0.693
OPUNC04G19970 Oryza punctata OPUNC04G19970 I 0.693
ORGLA04G0192900 Oryza glaberrima ORGLA04G0192900 I 0.693
ORUFI04G23890 Oryza rufipogon ORUFI04G23890 I 0.693
DREB1E Oryza sativa OS04G0572400 D 0.693
PRUPE_ppa017761mg Prunus persica PRUPE_ppa017761mg I 0.693
GSMUA_Achr7G05900_001 Musa acuminata GSMUA_Achr7G05900_001 I 0.692
GLYMA11G19341 Glycine max GLYMA11G19341 I 0.690
Aquca_122_00012 Aquilegia coerulea Aquca_122_00012 I 0.689
Aquca_013_00434 Aquilegia coerulea Aquca_013_00434 I 0.688
GLYMA12G09130 Glycine max GLYMA12G09130 I 0.683
MTR_5g010930 Medicago truncatula MTR_5g010930 I 0.681
GSMUA_Achr10G15510_001 Musa acuminata GSMUA_Achr10G15510_001 I 0.680
chr2.CM0304.640.nd Lotus japonicus chr2.CM0304.640.nd I 0.680
DREB1B Arabidopsis thaliana AT4G25490 D 0.679
GSMUA_Achr4G19660_001 Musa acuminata GSMUA_Achr4G19660_001 I 0.679
PGSC0003DMG400038366 Solanum tuberosum PGSC0003DMG400038366 I 0.679
Aquca_122_00013 Aquilegia coerulea Aquca_122_00013 I 0.679
GLYMA16G32330 Glycine max GLYMA16G32330 I 0.678
GRMZM2G042756 Zea mays GRMZM2G042756 I 0.678
Sb06g025900 Sorghum bicolor Sb06g025900 I 0.678
Si011005m.g Setaria italica Si011005m.g I 0.678
GLYMA17G14111 Glycine max GLYMA17G14111 I 0.677
Eucgr.A02825 Eucalyptus grandis Eucgr.A02825 I 0.677