POPTR_0012s13870 (Populus trichocarpa)
AP2

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00847 (AP2) IPR001471 POPTR_0012s13870 T004709_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
DREB1D
M06678_2.00 		Arabidopsis thaliana
NHBRCCGACRTNN
NNAYGTCGGYVDN		 Dap-seq
OMalley et al.(2016)
CBF4_col_a 		0.807 0.960
DREB1D
M06679_2.00 		Arabidopsis thaliana
HYRCCGACATND
HNATGTCGGYRD		 Dap-seq
OMalley et al.(2016)
CBF4_colamp_a 		0.807 0.960
DREB1A
M01624_2.00 		Arabidopsis thaliana
NRCCGACNNN
NNNGTCGGYN		 PBM
Weirauch et al.(2014)
pTH8163 		0.804 0.940
DREB1A
M01625_2.00 		Arabidopsis thaliana
NNRCCGACNW
WNGTCGGYNN		 PBM
Weirauch et al.(2014)
pTH9718 		0.804 0.940
DREB1A
M06641_2.00 		Arabidopsis thaliana
HNYBRCCGACDWNN
NNWHGTCGGYVRND		 Dap-seq
OMalley et al.(2016)
CBF3_col_a 		0.804 0.940
DREB1A
M06642_2.00 		Arabidopsis thaliana
YBRCCGACATN
NATGTCGGYVR		 Dap-seq
OMalley et al.(2016)
CBF3_colamp_a 		0.804 0.940
DREB1C
M01623_2.00 		Arabidopsis thaliana
RCCGACAT
ATGTCGGY		 PBM
Weirauch et al.(2014)
pTH8187 		0.768 0.880
DREB1C
M06639_2.00 		Arabidopsis thaliana
NNNHBRCCGACATNN
NNATGTCGGYVDNNN		 Dap-seq
OMalley et al.(2016)
CBF2_col_a 		0.768 0.880
DREB1C
M06640_2.00 		Arabidopsis thaliana
NYBRCCGACATVN
NBATGTCGGYVRN		 Dap-seq
OMalley et al.(2016)
CBF2_colamp_a 		0.768 0.880
DREB1G
M01635_2.00 		Oryza sativa
NYGCCGACAN
NTGTCGGCRN		 PBM
Weirauch et al.(2014)
pTH8352 		0.746 0.840
DREB1G
M09707_2.00 		Oryza sativa Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$DREB1G_01 		0.746 0.840
DREB1F
M00962_2.00 		Arabidopsis thaliana
NRCCGACNN
NNGTCGGYN		 PBM
LehtiShiu et al.(2015)
DDF1_Arabidopsis_thaliana 		0.732 0.800
DREB1F
M00840_2.00 		Arabidopsis thaliana
NRYCGACNN
NNGTCGRYN		 PBM
Franco-Zorrilla et al.(2014)
DDF1 		0.732 0.800
DDF1
M00964_2.00 		Arabidopsis lyrata
NRYCGACDY
RHGTCGRYN		 PBM
LehtiShiu et al.(2015)
DDF1_Arabidopsis_lyrata 		0.732 0.800
DREB1F
M06564_2.00 		Arabidopsis thaliana
NHNHYGYCGACATNN
NNATGTCGRCRDNDN		 Dap-seq
OMalley et al.(2016)
DDF1_col_a 		0.732 0.800
DREB1F
M06565_2.00 		Arabidopsis thaliana
HNDNNRYCGACAH
DTGTCGRYNNHND		 Dap-seq
OMalley et al.(2016)
DDF1_colamp_a 		0.732 0.800
DREB1F
M09701_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$DREB1F_03 		0.732 0.800
ddf2
M00965_2.00 		Arabidopsis lyrata
NRYCGACAT
ATGTCGRYN		 PBM
LehtiShiu et al.(2015)
DDF2_Arabidopsis_lyrata 		0.704 0.760
Q8S2T3_BRANA
M09745_2.00 		Brassica napus Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$CBF16_01 		0.702 0.900
Q6T3U0_BRANA
M09743_2.00 		Brassica napus Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$DREBII1_01 		0.702 0.900
DREB1E
M09709_2.00 		Oryza sativa Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$DREB1E_01 		0.696 0.820
DREB1B
M06643_2.00 		Arabidopsis thaliana
DHBRCCGACRHN
NDYGTCGGYVDH		 Dap-seq
OMalley et al.(2016)
CBF1_col_a 		0.683 0.900
DREB1B
M06644_2.00 		Arabidopsis thaliana
NNNHBRCCGACAWNN
NNWTGTCGGYVDNNN		 Dap-seq
OMalley et al.(2016)
CBF1_colamp_a 		0.683 0.900
For this family, TFs with SR scores > 0.677 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
POPTR_0012s13870.1 AP2 85 136

Links

Other AP2 family TFs
Other Populus trichocarpa TFs

223 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
cassava35062.m1 Manihot esculenta cassava35062.m1 I 0.839
Gorai.007G010100 Gossypium raimondii Gorai.007G010100 I 0.839
POPTR_0015s13830 Populus trichocarpa POPTR_0015s13830 I 0.833
mgf026642m Mimulus guttatus mgf026642m I 0.833
Cagra.2248s0026 Capsella grandiflora Cagra.2248s0026 I 0.832
Bostr.7867s0360 Boechera stricta Bostr.7867s0360 I 0.829
Thhalv10027405m.g Eutrema salsugineum Thhalv10027405m.g I 0.829
Cucsa.251030 Cucumis sativus Cucsa.251030 I 0.827
gene13329-v1.0-hybrid Fragaria vesca gene13329-v1.0-hybrid I 0.826
PK23332.1 Cannabis sativa PK23332.1 I 0.826
Cla006315 Citrullus lanatus Cla006315 I 0.825
SapurV1A.0068s0560 Salix purpurea SapurV1A.0068s0560 I 0.817
SapurV1A.0400s0160 Salix purpurea SapurV1A.0400s0160 I 0.817
PRUPE_ppa010935mg Prunus persica PRUPE_ppa010935mg I 0.814
GLYMA09G27180 Glycine max GLYMA09G27180 I 0.813
30147.m014313 Ricinus communis 30147.m014313 I 0.813
Eucgr.D01925 Eucalyptus grandis Eucgr.D01925 I 0.811
cassava18935.valid.m1 Manihot esculenta cassava18935.valid.m1 I 0.810
DREB1D Arabidopsis thaliana AT5G51990 D 0.807
Bo9g104770 Brassica oleracea Bo9g104770 I 0.807
Bra028290 Brassica rapa Bra028290 I 0.807
CBF4 Arabidopsis lyrata scaffold_801637.1 I 0.807
Bostr.15774s0346 Boechera stricta Bostr.15774s0346 I 0.807
Cagra.0094s0011 Capsella grandiflora Cagra.0094s0011 I 0.807
Carubv10027759m.g Capsella rubella Carubv10027759m.g I 0.807
Thhalv10015252m.g Eutrema salsugineum Thhalv10015252m.g I 0.807
Solyc03g026270.1 Solanum lycopersicum Solyc03g026270.1 I 0.805
DREB1A Arabidopsis thaliana AT4G25480 D 0.804
VIT_16s0100g00380 Vitis vinifera VIT_16s0100g00380 I 0.804
Solyc03g026280.2 Solanum lycopersicum Solyc03g026280.2 I 0.803
Bostr.7867s0359 Boechera stricta Bostr.7867s0359 I 0.803
Bostr.7867s0361 Boechera stricta Bostr.7867s0361 I 0.803
Cagra.28753s0001 Capsella grandiflora Cagra.28753s0001 I 0.803
Carubv10005709m.g Capsella rubella Carubv10005709m.g I 0.803
Solyc03g124110.1 Solanum lycopersicum Solyc03g124110.1 I 0.800
CBF2 Arabidopsis lyrata fgenesh2_kg.7__1712__AT4G25470.1 I 0.797
Eucgr.E00529 Eucalyptus grandis Eucgr.E00529 I 0.797
gene32378-v1.0-hybrid Fragaria vesca gene32378-v1.0-hybrid I 0.796
Cla002362 Citrullus lanatus Cla002362 I 0.795
cassava41192.m1 Manihot esculenta cassava41192.m1 I 0.795
PGSC0003DMG400014309 Solanum tuberosum PGSC0003DMG400014309 I 0.791
mgf017136m Mimulus guttatus mgf017136m I 0.790
MDP0000154764 Malus domestica MDP0000154764 I 0.790
MDP0000198054 Malus domestica MDP0000198054 I 0.789
PGSC0003DMG400014310 Solanum tuberosum PGSC0003DMG400014310 I 0.788
Cla011674 Citrullus lanatus Cla011674 I 0.788
PRUPE_ppa010800mg Prunus persica PRUPE_ppa010800mg I 0.787
Pm023775 Prunus mume Pm023775 I 0.787
Gorai.006G046200 Gossypium raimondii Gorai.006G046200 I 0.787
VIT_02s0025g04460 Vitis vinifera VIT_02s0025g04460 I 0.786
evm.TU.supercontig_74.84 Carica papaya evm.TU.supercontig_74.84 I 0.786
GSMUA_Achr11G21630_001 Musa acuminata GSMUA_Achr11G21630_001 I 0.784
PGSC0003DMG400014311 Solanum tuberosum PGSC0003DMG400014311 I 0.783
Gorai.008G243600 Gossypium raimondii Gorai.008G243600 I 0.781
Carubv10006965m.g Capsella rubella Carubv10006965m.g I 0.780
GLYMA10G38440 Glycine max GLYMA10G38440 I 0.779
Eucgr.A02818 Eucalyptus grandis Eucgr.A02818 I 0.779
PRUPE_ppa010909mg Prunus persica PRUPE_ppa010909mg I 0.777
MTR_6g466130 Medicago truncatula MTR_6g466130 I 0.775
POPTR_0001s08710 Populus trichocarpa POPTR_0001s08710 I 0.774
mgf019061m Mimulus guttatus mgf019061m I 0.774
GLYMA20G29410 Glycine max GLYMA20G29410 I 0.773
Cucsa.166340 Cucumis sativus Cucsa.166340 I 0.773
Ciclev10007068m.g Citrus clementina Ciclev10007068m.g I 0.773
orange1.1g028094m.g Citrus sinensis orange1.1g028094m.g I 0.773
PRUPE_ppa021197mg Prunus persica PRUPE_ppa021197mg I 0.772
Pm023769 Prunus mume Pm023769 I 0.772
TCM_016175 Theobroma cacao TCM_016175 I 0.771
DREB1C Arabidopsis thaliana AT4G25470 D 0.768
Pm023772 Prunus mume Pm023772 I 0.765
30190.m011120 Ricinus communis 30190.m011120 I 0.764
Cucsa.302750 Cucumis sativus Cucsa.302750 I 0.763
60638.m00016 Ricinus communis 60638.m00016 I 0.760
GLYMA12G30740 Glycine max GLYMA12G30740 I 0.759
PGSC0003DMG400012525 Solanum tuberosum PGSC0003DMG400012525 I 0.759
POPTR_0001s08720 Populus trichocarpa POPTR_0001s08720 I 0.756
orange1.1g029015m.g Citrus sinensis orange1.1g029015m.g I 0.756
SapurV1A.0282s0070 Salix purpurea SapurV1A.0282s0070 I 0.756
Ciclev10021923m.g Citrus clementina Ciclev10021923m.g I 0.755
GSMUA_Achr8G11980_001 Musa acuminata GSMUA_Achr8G11980_001 I 0.754
POPTR_0009s14990 Populus trichocarpa POPTR_0009s14990 I 0.754
SapurV1A.0219s0320 Salix purpurea SapurV1A.0219s0320 I 0.754
30190.m011119 Ricinus communis 30190.m011119 I 0.753
SapurV1A.0045s0710 Salix purpurea SapurV1A.0045s0710 I 0.753
SapurV1A.0282s0080 Salix purpurea SapurV1A.0282s0080 I 0.753
BRADI3G51630 Brachypodium distachyon BRADI3G51630 I 0.751
MLOC_75886 Hordeum vulgare MLOC_75886 I 0.751
MTR_6g465510 Medicago truncatula MTR_6g465510 I 0.751
mgf026339m Mimulus guttatus mgf026339m I 0.748
MTR_6g465690 Medicago truncatula MTR_6g465690 I 0.747
MTR_6g466000 Medicago truncatula MTR_6g466000 I 0.747
DREB1G Oryza indica BGIOSGA008804 I 0.746
GRMZM2G137341 Zea mays GRMZM2G137341 I 0.746
LPERR02G22610 Leersia perrieri LPERR02G22610 I 0.746
OBART02G27760 Oryza barthii OBART02G27760 I 0.746
OGLUM02G28340 Oryza glumaepatula OGLUM02G28340 I 0.746
OMERI02G26980 Oryza meridionalis OMERI02G26980 I 0.746
ONIVA02G30790 Oryza nivara ONIVA02G30790 I 0.746
OPUNC02G25480 Oryza punctata OPUNC02G25480 I 0.746
ORUFI02G29230 Oryza rufipogon ORUFI02G29230 I 0.746
DREB1G Oryza sativa OS02G0677300 D 0.746
Sb04g031950 Sorghum bicolor Sb04g031950 I 0.746
Pavir.Aa00912 Panicum virgatum Pavir.Aa00912 I 0.746
Pavir.Ab02685 Panicum virgatum Pavir.Ab02685 I 0.746
GLYMA13G39540 Glycine max GLYMA13G39540 I 0.745
MTR_1g101600 Medicago truncatula MTR_1g101600 I 0.745
LjSGA_037211.1 Lotus japonicus LjSGA_037211.1 I 0.745
Aquca_012_00144 Aquilegia coerulea Aquca_012_00144 I 0.743
MTR_8g006410 Medicago truncatula MTR_8g006410 I 0.742
PGSC0003DMG400004255 Solanum tuberosum PGSC0003DMG400004255 I 0.740
Bo01335s010 Brassica oleracea Bo01335s010 I 0.739
Bra016763 Brassica rapa Bra016763 I 0.739
MTR_6g465420 Medicago truncatula MTR_6g465420 I 0.738
MTR_6g465430 Medicago truncatula MTR_6g465430 I 0.738
cassava17064.m1 Manihot esculenta cassava17064.m1 I 0.738
MTR_6g465460 Medicago truncatula MTR_6g465460 I 0.736
Si018262m.g Setaria italica Si018262m.g I 0.736
Aquca_013_00435 Aquilegia coerulea Aquca_013_00435 I 0.736
VIT_11s0016g02140 Vitis vinifera VIT_11s0016g02140 I 0.735
Thhalv10009978m.g Eutrema salsugineum Thhalv10009978m.g I 0.735
Pm019386 Prunus mume Pm019386 I 0.734
Aquca_013_00436 Aquilegia coerulea Aquca_013_00436 I 0.734
evm.TU.supercontig_5.66 Carica papaya evm.TU.supercontig_5.66 I 0.734
POPTR_0004s19820 Populus trichocarpa POPTR_0004s19820 I 0.733
Lus10001871.g Linum usitatissimum Lus10001871.g I 0.733
Lus10006332.g Linum usitatissimum Lus10006332.g I 0.733
Lus10006334.g Linum usitatissimum Lus10006334.g I 0.733
Lus10029601.g Linum usitatissimum Lus10029601.g I 0.733
Lus10029602.g Linum usitatissimum Lus10029602.g I 0.733
DREB1F Arabidopsis thaliana AT1G12610 D 0.732
DDF1 Arabidopsis lyrata fgenesh2_kg.1__1363__AT1G12610.1 D 0.732
Solyc08g007820.1 Solanum lycopersicum Solyc08g007820.1 I 0.732
Bo8g108050 Brassica oleracea Bo8g108050 I 0.730
Bra026963 Brassica rapa Bra026963 I 0.730
PGSC0003DMG400012524 Solanum tuberosum PGSC0003DMG400012524 I 0.729
PRUPE_ppa017761mg Prunus persica PRUPE_ppa017761mg I 0.729
Eucgr.A02820 Eucalyptus grandis Eucgr.A02820 I 0.729
Eucgr.A02824 Eucalyptus grandis Eucgr.A02824 I 0.729
Eucgr.A02826 Eucalyptus grandis Eucgr.A02826 I 0.729
Eucgr.A02832 Eucalyptus grandis Eucgr.A02832 I 0.729
MTR_6g465450 Medicago truncatula MTR_6g465450 I 0.726
Cagra.0568s0171 Capsella grandiflora Cagra.0568s0171 I 0.725
Carubv10010303m.g Capsella rubella Carubv10010303m.g I 0.725
Eucgr.A02822 Eucalyptus grandis Eucgr.A02822 I 0.725
MTR_6g465530 Medicago truncatula MTR_6g465530 I 0.724
Ca_04504 Cicer arietinum Ca_04504 I 0.724
Lus10031657.g Linum usitatissimum Lus10031657.g I 0.724
Ca_18948 Cicer arietinum Ca_18948 I 0.723
mgf016974m Mimulus guttatus mgf016974m I 0.723
mgf018631m Mimulus guttatus mgf018631m I 0.723
mgf018934m Mimulus guttatus mgf018934m I 0.723
mgf022408m Mimulus guttatus mgf022408m I 0.723
Eucgr.A02831 Eucalyptus grandis Eucgr.A02831 I 0.723
MTR_2g085015 Medicago truncatula MTR_2g085015 I 0.722
Bostr.13671s0200 Boechera stricta Bostr.13671s0200 I 0.722
Lus10027412.g Linum usitatissimum Lus10027412.g I 0.721
MTR_5g010930 Medicago truncatula MTR_5g010930 I 0.720
Eucgr.A02827 Eucalyptus grandis Eucgr.A02827 I 0.719
Eucgr.A02834 Eucalyptus grandis Eucgr.A02834 I 0.719
Eucgr.A02821 Eucalyptus grandis Eucgr.A02821 I 0.718
chr3.LjT42M03.60.nd Lotus japonicus chr3.LjT42M03.60.nd I 0.716
GSMUA_Achr7G05900_001 Musa acuminata GSMUA_Achr7G05900_001 I 0.714
AMTR_s00095p00096190 Amborella trichopoda AMTR_s00095p00096190 I 0.712
orange1.1g026103m.g Citrus sinensis orange1.1g026103m.g I 0.712
GLYMA01G42500 Glycine max GLYMA01G42500 I 0.711
GLYMA11G19341 Glycine max GLYMA11G19341 I 0.708
Lus10017829.g Linum usitatissimum Lus10017829.g I 0.708
Aquca_122_00012 Aquilegia coerulea Aquca_122_00012 I 0.707
MTR_6g465850 Medicago truncatula MTR_6g465850 I 0.706
cassava41218.m1 Manihot esculenta cassava41218.m1 I 0.706
ddf2 Arabidopsis lyrata fgenesh2_kg.2__175__AT1G63030.1 D 0.704
PGSC0003DMG400038366 Solanum tuberosum PGSC0003DMG400038366 I 0.704
Bostr.22157s0019 Boechera stricta Bostr.22157s0019 I 0.704
Thhalv10023865m.g Eutrema salsugineum Thhalv10023865m.g I 0.704
AMTR_s00069p00141520 Amborella trichopoda AMTR_s00069p00141520 I 0.702
Bo7g110320 Brassica oleracea Bo7g110320 I 0.702
Bra019162 Brassica rapa Bra019162 I 0.702
GLYMA17G14111 Glycine max GLYMA17G14111 I 0.702
PRUPE_ppa014628mg Prunus persica PRUPE_ppa014628mg N 0.702
Q6T3U0_BRANA Brassica napus Q6T3U0_BRANA D 0.702
Q8S2T3_BRANA Brassica napus Q8S2T3_BRANA D 0.702
GLYMA12G09130 Glycine max GLYMA12G09130 I 0.701
GLYMA16G32330 Glycine max GLYMA16G32330 I 0.700
Bra022770 Brassica rapa Bra022770 I 0.699
Solyc08g007830.1 Solanum lycopersicum Solyc08g007830.1 I 0.699
Aquca_013_00434 Aquilegia coerulea Aquca_013_00434 I 0.698
Ca_08732 Cicer arietinum Ca_08732 I 0.697
Aquca_122_00013 Aquilegia coerulea Aquca_122_00013 I 0.697
Gorai.008G280600 Gossypium raimondii Gorai.008G280600 I 0.697
DREB1E Oryza indica BGIOSGA016950 I 0.696
LPERR04G18190 Leersia perrieri LPERR04G18190 I 0.696
OBART04G22220 Oryza barthii OBART04G22220 I 0.696
OGLUM04G22260 Oryza glumaepatula OGLUM04G22260 I 0.696
OMERI04G18770 Oryza meridionalis OMERI04G18770 I 0.696
ONIVA04G20840 Oryza nivara ONIVA04G20840 I 0.696
OPUNC04G19970 Oryza punctata OPUNC04G19970 I 0.696
ORGLA04G0192900 Oryza glaberrima ORGLA04G0192900 I 0.696
ORUFI04G23890 Oryza rufipogon ORUFI04G23890 I 0.696
DREB1E Oryza sativa OS04G0572400 D 0.696
Eucgr.A02825 Eucalyptus grandis Eucgr.A02825 I 0.695
Solyc01g009440.1 Solanum lycopersicum Solyc01g009440.1 I 0.694
VIT_06s0061g01400 Vitis vinifera VIT_06s0061g01400 I 0.694
chr2.CM0304.640.nd Lotus japonicus chr2.CM0304.640.nd I 0.694
GSMUA_Achr4G19660_001 Musa acuminata GSMUA_Achr4G19660_001 I 0.693
GLYMA05G03560 Glycine max GLYMA05G03560 I 0.691
Bo5g016750 Brassica oleracea Bo5g016750 I 0.690
PGSC0003DMG400012526 Solanum tuberosum PGSC0003DMG400012526 I 0.690
Bra019777 Brassica rapa Bra019777 I 0.689
MTR_4g102660 Medicago truncatula MTR_4g102660 I 0.689
Bo8g050800 Brassica oleracea Bo8g050800 I 0.688
Bra010460 Brassica rapa Bra010460 I 0.688
Eucgr.A02830 Eucalyptus grandis Eucgr.A02830 I 0.688
Lus10019455.g Linum usitatissimum Lus10019455.g I 0.687
GRMZM2G042756 Zea mays GRMZM2G042756 I 0.685
Sb06g025900 Sorghum bicolor Sb06g025900 I 0.685
Si011005m.g Setaria italica Si011005m.g I 0.685
Cagra.23885s0001 Capsella grandiflora Cagra.23885s0001 I 0.685
Carubv10021910m.g Capsella rubella Carubv10021910m.g I 0.685
DREB1B Arabidopsis thaliana AT4G25490 D 0.683
Ca_00768 Cicer arietinum Ca_00768 N 0.683
Pavir.Ga00931 Panicum virgatum Pavir.Ga00931 I 0.683
mgf017477m Mimulus guttatus mgf017477m N 0.681
GSMUA_Achr10G15510_001 Musa acuminata GSMUA_Achr10G15510_001 I 0.677