Cla002362 (Citrullus lanatus)
AP2

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00847 (AP2) IPR001471 Cla002362 T006408_2.00 GigaDB (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
DREB1D
M06678_2.00 		Arabidopsis thaliana
NHBRCCGACRTNN
NNAYGTCGGYVDN		 Dap-seq
OMalley et al.(2016)
CBF4_col_a 		0.826 0.940
DREB1D
M06679_2.00 		Arabidopsis thaliana
HYRCCGACATND
HNATGTCGGYRD		 Dap-seq
OMalley et al.(2016)
CBF4_colamp_a 		0.826 0.940
DREB1C
M01623_2.00 		Arabidopsis thaliana
RCCGACAT
ATGTCGGY		 PBM
Weirauch et al.(2014)
pTH8187 		0.815 0.940
DREB1C
M06639_2.00 		Arabidopsis thaliana
NNNHBRCCGACATNN
NNATGTCGGYVDNNN		 Dap-seq
OMalley et al.(2016)
CBF2_col_a 		0.815 0.940
DREB1C
M06640_2.00 		Arabidopsis thaliana
NYBRCCGACATVN
NBATGTCGGYVRN		 Dap-seq
OMalley et al.(2016)
CBF2_colamp_a 		0.815 0.940
DREB1A
M01624_2.00 		Arabidopsis thaliana
NRCCGACNNN
NNNGTCGGYN		 PBM
Weirauch et al.(2014)
pTH8163 		0.780 0.920
DREB1A
M01625_2.00 		Arabidopsis thaliana
NNRCCGACNW
WNGTCGGYNN		 PBM
Weirauch et al.(2014)
pTH9718 		0.780 0.920
DREB1A
M06641_2.00 		Arabidopsis thaliana
HNYBRCCGACDWNN
NNWHGTCGGYVRND		 Dap-seq
OMalley et al.(2016)
CBF3_col_a 		0.780 0.920
DREB1A
M06642_2.00 		Arabidopsis thaliana
YBRCCGACATN
NATGTCGGYVR		 Dap-seq
OMalley et al.(2016)
CBF3_colamp_a 		0.780 0.920
DREB1B
M06643_2.00 		Arabidopsis thaliana
DHBRCCGACRHN
NDYGTCGGYVDH		 Dap-seq
OMalley et al.(2016)
CBF1_col_a 		0.716 0.920
DREB1B
M06644_2.00 		Arabidopsis thaliana
NNNHBRCCGACAWNN
NNWTGTCGGYVDNNN		 Dap-seq
OMalley et al.(2016)
CBF1_colamp_a 		0.716 0.920
DREB1G
M01635_2.00 		Oryza sativa
NYGCCGACAN
NTGTCGGCRN		 PBM
Weirauch et al.(2014)
pTH8352 		0.705 0.800
DREB1G
M09707_2.00 		Oryza sativa Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$DREB1G_01 		0.705 0.800
Q8S2T3_BRANA
M09745_2.00 		Brassica napus Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$CBF16_01 		0.699 0.860
Q6T3U0_BRANA
M09743_2.00 		Brassica napus Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$DREBII1_01 		0.699 0.860
DREB1E
M09709_2.00 		Oryza sativa Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$DREB1E_01 		0.695 0.780
DREB1F
M00962_2.00 		Arabidopsis thaliana
NRCCGACNN
NNGTCGGYN		 PBM
LehtiShiu et al.(2015)
DDF1_Arabidopsis_thaliana 		0.694 0.720
DREB1F
M00840_2.00 		Arabidopsis thaliana
NRYCGACNN
NNGTCGRYN		 PBM
Franco-Zorrilla et al.(2014)
DDF1 		0.694 0.720
DDF1
M00964_2.00 		Arabidopsis lyrata
NRYCGACDY
RHGTCGRYN		 PBM
LehtiShiu et al.(2015)
DDF1_Arabidopsis_lyrata 		0.694 0.720
DREB1F
M06564_2.00 		Arabidopsis thaliana
NHNHYGYCGACATNN
NNATGTCGRCRDNDN		 Dap-seq
OMalley et al.(2016)
DDF1_col_a 		0.694 0.720
DREB1F
M06565_2.00 		Arabidopsis thaliana
HNDNNRYCGACAH
DTGTCGRYNNHND		 Dap-seq
OMalley et al.(2016)
DDF1_colamp_a 		0.694 0.720
DREB1F
M09701_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$DREB1F_03 		0.694 0.720
Q8S2T5_BRANA
M09746_2.00 		Brassica napus Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$CBF5_01 		0.693 0.880
For this family, TFs with SR scores > 0.677 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Cla002362 AP2 45 96

Links

Other AP2 family TFs
Other Citrullus lanatus TFs

209 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
DREB1D Arabidopsis thaliana AT5G51990 D 0.826
Bo9g104770 Brassica oleracea Bo9g104770 I 0.826
Bra028290 Brassica rapa Bra028290 I 0.826
CBF4 Arabidopsis lyrata scaffold_801637.1 I 0.826
Bostr.15774s0346 Boechera stricta Bostr.15774s0346 I 0.826
Cagra.0094s0011 Capsella grandiflora Cagra.0094s0011 I 0.826
Carubv10027759m.g Capsella rubella Carubv10027759m.g I 0.826
Thhalv10015252m.g Eutrema salsugineum Thhalv10015252m.g I 0.826
cassava18935.valid.m1 Manihot esculenta cassava18935.valid.m1 I 0.823
DREB1C Arabidopsis thaliana AT4G25470 D 0.815
Solyc03g026270.1 Solanum lycopersicum Solyc03g026270.1 I 0.809
gene13329-v1.0-hybrid Fragaria vesca gene13329-v1.0-hybrid I 0.809
PK23332.1 Cannabis sativa PK23332.1 I 0.809
Solyc03g124110.1 Solanum lycopersicum Solyc03g124110.1 I 0.804
Bostr.7867s0360 Boechera stricta Bostr.7867s0360 I 0.804
Thhalv10027405m.g Eutrema salsugineum Thhalv10027405m.g I 0.804
mgf026642m Mimulus guttatus mgf026642m I 0.803
PGSC0003DMG400014311 Solanum tuberosum PGSC0003DMG400014311 I 0.802
Cagra.2248s0026 Capsella grandiflora Cagra.2248s0026 I 0.801
Solyc03g026280.2 Solanum lycopersicum Solyc03g026280.2 I 0.800
PRUPE_ppa010935mg Prunus persica PRUPE_ppa010935mg I 0.797
Cucsa.251030 Cucumis sativus Cucsa.251030 I 0.796
POPTR_0012s13870 Populus trichocarpa POPTR_0012s13870 I 0.795
cassava35062.m1 Manihot esculenta cassava35062.m1 I 0.795
Gorai.007G010100 Gossypium raimondii Gorai.007G010100 I 0.795
Cla006315 Citrullus lanatus Cla006315 I 0.794
Cucsa.166340 Cucumis sativus Cucsa.166340 I 0.791
Cucsa.302750 Cucumis sativus Cucsa.302750 I 0.791
POPTR_0015s13830 Populus trichocarpa POPTR_0015s13830 I 0.789
CBF2 Arabidopsis lyrata fgenesh2_kg.7__1712__AT4G25470.1 I 0.786
GLYMA09G27180 Glycine max GLYMA09G27180 I 0.786
PGSC0003DMG400014310 Solanum tuberosum PGSC0003DMG400014310 I 0.785
PGSC0003DMG400014309 Solanum tuberosum PGSC0003DMG400014309 I 0.782
Eucgr.D01925 Eucalyptus grandis Eucgr.D01925 I 0.781
DREB1A Arabidopsis thaliana AT4G25480 D 0.780
Bostr.7867s0359 Boechera stricta Bostr.7867s0359 I 0.778
Bostr.7867s0361 Boechera stricta Bostr.7867s0361 I 0.778
Cagra.28753s0001 Capsella grandiflora Cagra.28753s0001 I 0.778
Carubv10005709m.g Capsella rubella Carubv10005709m.g I 0.778
SapurV1A.0068s0560 Salix purpurea SapurV1A.0068s0560 I 0.773
GLYMA12G30740 Glycine max GLYMA12G30740 I 0.772
SapurV1A.0400s0160 Salix purpurea SapurV1A.0400s0160 I 0.772
30147.m014313 Ricinus communis 30147.m014313 I 0.768
Eucgr.E00529 Eucalyptus grandis Eucgr.E00529 I 0.767
gene32378-v1.0-hybrid Fragaria vesca gene32378-v1.0-hybrid I 0.766
evm.TU.supercontig_74.84 Carica papaya evm.TU.supercontig_74.84 I 0.762
VIT_16s0100g00380 Vitis vinifera VIT_16s0100g00380 I 0.759
GLYMA13G39540 Glycine max GLYMA13G39540 I 0.758
Cla011674 Citrullus lanatus Cla011674 I 0.758
Gorai.006G046200 Gossypium raimondii Gorai.006G046200 I 0.756
orange1.1g029015m.g Citrus sinensis orange1.1g029015m.g I 0.754
POPTR_0001s08710 Populus trichocarpa POPTR_0001s08710 I 0.751
cassava41192.m1 Manihot esculenta cassava41192.m1 I 0.751
Gorai.008G243600 Gossypium raimondii Gorai.008G243600 I 0.751
MTR_1g101600 Medicago truncatula MTR_1g101600 I 0.750
mgf017136m Mimulus guttatus mgf017136m I 0.750
30190.m011120 Ricinus communis 30190.m011120 I 0.749
TCM_016175 Theobroma cacao TCM_016175 I 0.747
MDP0000154764 Malus domestica MDP0000154764 I 0.746
MTR_6g465510 Medicago truncatula MTR_6g465510 I 0.745
MDP0000198054 Malus domestica MDP0000198054 I 0.745
MTR_6g466130 Medicago truncatula MTR_6g466130 I 0.744
GSMUA_Achr11G21630_001 Musa acuminata GSMUA_Achr11G21630_001 I 0.743
PRUPE_ppa010800mg Prunus persica PRUPE_ppa010800mg I 0.743
Pm023775 Prunus mume Pm023775 I 0.743
Lus10031657.g Linum usitatissimum Lus10031657.g I 0.743
Carubv10006965m.g Capsella rubella Carubv10006965m.g I 0.742
GLYMA20G29410 Glycine max GLYMA20G29410 I 0.741
MTR_2g085015 Medicago truncatula MTR_2g085015 I 0.741
MTR_6g465690 Medicago truncatula MTR_6g465690 I 0.741
MTR_6g466000 Medicago truncatula MTR_6g466000 I 0.741
VIT_02s0025g04460 Vitis vinifera VIT_02s0025g04460 I 0.741
Ciclev10007068m.g Citrus clementina Ciclev10007068m.g I 0.741
orange1.1g028094m.g Citrus sinensis orange1.1g028094m.g I 0.741
Lus10027412.g Linum usitatissimum Lus10027412.g I 0.740
POPTR_0001s08720 Populus trichocarpa POPTR_0001s08720 I 0.739
SapurV1A.0282s0070 Salix purpurea SapurV1A.0282s0070 I 0.739
GLYMA10G38440 Glycine max GLYMA10G38440 I 0.735
Eucgr.A02818 Eucalyptus grandis Eucgr.A02818 I 0.735
mgf019061m Mimulus guttatus mgf019061m I 0.734
Aquca_012_00144 Aquilegia coerulea Aquca_012_00144 I 0.734
MTR_6g465430 Medicago truncatula MTR_6g465430 I 0.732
PRUPE_ppa010909mg Prunus persica PRUPE_ppa010909mg I 0.732
Ciclev10021923m.g Citrus clementina Ciclev10021923m.g I 0.731
MTR_6g465460 Medicago truncatula MTR_6g465460 I 0.730
SapurV1A.0045s0710 Salix purpurea SapurV1A.0045s0710 I 0.730
SapurV1A.0282s0080 Salix purpurea SapurV1A.0282s0080 I 0.730
MTR_6g465530 Medicago truncatula MTR_6g465530 I 0.729
PRUPE_ppa021197mg Prunus persica PRUPE_ppa021197mg I 0.728
Ca_04504 Cicer arietinum Ca_04504 I 0.728
Pm023769 Prunus mume Pm023769 I 0.728
mgf026339m Mimulus guttatus mgf026339m I 0.728
Aquca_013_00435 Aquilegia coerulea Aquca_013_00435 I 0.728
Aquca_013_00436 Aquilegia coerulea Aquca_013_00436 I 0.726
MTR_6g465450 Medicago truncatula MTR_6g465450 I 0.724
Pm023772 Prunus mume Pm023772 I 0.724
Lus10001871.g Linum usitatissimum Lus10001871.g I 0.724
Lus10006332.g Linum usitatissimum Lus10006332.g I 0.724
Lus10006334.g Linum usitatissimum Lus10006334.g I 0.724
Lus10029601.g Linum usitatissimum Lus10029601.g I 0.724
Lus10029602.g Linum usitatissimum Lus10029602.g I 0.724
orange1.1g026103m.g Citrus sinensis orange1.1g026103m.g I 0.724
MTR_6g465420 Medicago truncatula MTR_6g465420 I 0.722
60638.m00016 Ricinus communis 60638.m00016 I 0.722
GLYMA11G19341 Glycine max GLYMA11G19341 I 0.721
PGSC0003DMG400004255 Solanum tuberosum PGSC0003DMG400004255 I 0.721
mgf016974m Mimulus guttatus mgf016974m I 0.721
mgf018631m Mimulus guttatus mgf018631m I 0.721
mgf018934m Mimulus guttatus mgf018934m I 0.721
mgf022408m Mimulus guttatus mgf022408m I 0.721
chr3.LjT42M03.60.nd Lotus japonicus chr3.LjT42M03.60.nd I 0.721
Aquca_122_00012 Aquilegia coerulea Aquca_122_00012 I 0.720
MTR_8g006410 Medicago truncatula MTR_8g006410 I 0.719
PGSC0003DMG400012525 Solanum tuberosum PGSC0003DMG400012525 I 0.718
Pm019386 Prunus mume Pm019386 I 0.717
DREB1B Arabidopsis thaliana AT4G25490 D 0.716
GLYMA12G09130 Glycine max GLYMA12G09130 I 0.714
Ca_18948 Cicer arietinum Ca_18948 I 0.714
GSMUA_Achr8G11980_001 Musa acuminata GSMUA_Achr8G11980_001 I 0.713
Carubv10006809m.g Capsella rubella Carubv10006809m.g I 0.713
Eucgr.A02820 Eucalyptus grandis Eucgr.A02820 I 0.713
Eucgr.A02824 Eucalyptus grandis Eucgr.A02824 I 0.713
Eucgr.A02826 Eucalyptus grandis Eucgr.A02826 I 0.713
Eucgr.A02832 Eucalyptus grandis Eucgr.A02832 I 0.713
MTR_6g465850 Medicago truncatula MTR_6g465850 I 0.712
chr2.CM0304.640.nd Lotus japonicus chr2.CM0304.640.nd I 0.711
BRADI3G51630 Brachypodium distachyon BRADI3G51630 I 0.710
MLOC_75886 Hordeum vulgare MLOC_75886 I 0.710
POPTR_0004s19820 Populus trichocarpa POPTR_0004s19820 I 0.710
POPTR_0009s14990 Populus trichocarpa POPTR_0009s14990 I 0.710
Aquca_122_00013 Aquilegia coerulea Aquca_122_00013 I 0.710
SapurV1A.0219s0320 Salix purpurea SapurV1A.0219s0320 I 0.710
AMTR_s00095p00096190 Amborella trichopoda AMTR_s00095p00096190 I 0.709
GSMUA_Achr4G19660_001 Musa acuminata GSMUA_Achr4G19660_001 I 0.709
30190.m011119 Ricinus communis 30190.m011119 I 0.709
Eucgr.A02822 Eucalyptus grandis Eucgr.A02822 I 0.709
VIT_06s0061g01400 Vitis vinifera VIT_06s0061g01400 I 0.707
Cagra.2248s0025 Capsella grandiflora Cagra.2248s0025 I 0.707
Eucgr.A02831 Eucalyptus grandis Eucgr.A02831 I 0.707
DREB1G Oryza indica BGIOSGA008804 I 0.705
GRMZM2G137341 Zea mays GRMZM2G137341 I 0.705
LPERR02G22610 Leersia perrieri LPERR02G22610 I 0.705
OBART02G27760 Oryza barthii OBART02G27760 I 0.705
OGLUM02G28340 Oryza glumaepatula OGLUM02G28340 I 0.705
OMERI02G26980 Oryza meridionalis OMERI02G26980 I 0.705
ONIVA02G30790 Oryza nivara ONIVA02G30790 I 0.705
OPUNC02G25480 Oryza punctata OPUNC02G25480 I 0.705
ORUFI02G29230 Oryza rufipogon ORUFI02G29230 I 0.705
DREB1G Oryza sativa OS02G0677300 D 0.705
Sb04g031950 Sorghum bicolor Sb04g031950 I 0.705
Pavir.Aa00912 Panicum virgatum Pavir.Aa00912 I 0.705
Pavir.Ab02685 Panicum virgatum Pavir.Ab02685 I 0.705
Eucgr.A02821 Eucalyptus grandis Eucgr.A02821 I 0.703
Eucgr.A02827 Eucalyptus grandis Eucgr.A02827 I 0.703
Eucgr.A02834 Eucalyptus grandis Eucgr.A02834 I 0.703
Bra022770 Brassica rapa Bra022770 I 0.702
LjSGA_037211.1 Lotus japonicus LjSGA_037211.1 I 0.700
Bo7g110320 Brassica oleracea Bo7g110320 I 0.699
Bra019162 Brassica rapa Bra019162 I 0.699
Q6T3U0_BRANA Brassica napus Q6T3U0_BRANA D 0.699
Q8S2T3_BRANA Brassica napus Q8S2T3_BRANA D 0.699
Bo01335s010 Brassica oleracea Bo01335s010 I 0.698
Bo8g108050 Brassica oleracea Bo8g108050 I 0.698
Bra016763 Brassica rapa Bra016763 I 0.698
Bra026963 Brassica rapa Bra026963 I 0.698
Thhalv10009978m.g Eutrema salsugineum Thhalv10009978m.g I 0.697
DREB1E Oryza indica BGIOSGA016950 I 0.695
LPERR04G18190 Leersia perrieri LPERR04G18190 I 0.695
OBART04G22220 Oryza barthii OBART04G22220 I 0.695
OGLUM04G22260 Oryza glumaepatula OGLUM04G22260 I 0.695
OMERI04G18770 Oryza meridionalis OMERI04G18770 I 0.695
ONIVA04G20840 Oryza nivara ONIVA04G20840 I 0.695
OPUNC04G19970 Oryza punctata OPUNC04G19970 I 0.695
ORGLA04G0192900 Oryza glaberrima ORGLA04G0192900 I 0.695
ORUFI04G23890 Oryza rufipogon ORUFI04G23890 I 0.695
DREB1E Oryza sativa OS04G0572400 D 0.695
PGSC0003DMG400012524 Solanum tuberosum PGSC0003DMG400012524 I 0.695
Si018262m.g Setaria italica Si018262m.g I 0.695
DREB1F Arabidopsis thaliana AT1G12610 D 0.694
DDF1 Arabidopsis lyrata fgenesh2_kg.1__1363__AT1G12610.1 D 0.694
Bo3g024240 Brassica oleracea Bo3g024240 I 0.693
cassava17064.m1 Manihot esculenta cassava17064.m1 I 0.693
Gorai.003G162700 Gossypium raimondii Gorai.003G162700 I 0.693
Q8S2T5_BRANA Brassica napus Q8S2T5_BRANA D 0.693
Solyc08g007820.1 Solanum lycopersicum Solyc08g007820.1 I 0.692
Solyc01g009440.1 Solanum lycopersicum Solyc01g009440.1 I 0.691
VIT_11s0016g02140 Vitis vinifera VIT_11s0016g02140 I 0.690
Aquca_013_00434 Aquilegia coerulea Aquca_013_00434 I 0.690
evm.TU.supercontig_5.66 Carica papaya evm.TU.supercontig_5.66 I 0.690
GSMUA_Achr10G15510_001 Musa acuminata GSMUA_Achr10G15510_001 I 0.689
cassava41218.m1 Manihot esculenta cassava41218.m1 I 0.689
PRUPE_ppa017761mg Prunus persica PRUPE_ppa017761mg I 0.688
GSMUA_Achr7G05900_001 Musa acuminata GSMUA_Achr7G05900_001 I 0.687
GLYMA12G30710 Glycine max GLYMA12G30710 I 0.686
Cagra.0568s0171 Capsella grandiflora Cagra.0568s0171 I 0.686
Carubv10010303m.g Capsella rubella Carubv10010303m.g I 0.686
GSMUA_Achr2G20280_001 Musa acuminata GSMUA_Achr2G20280_001 I 0.684
Bostr.13671s0200 Boechera stricta Bostr.13671s0200 I 0.684
AMTR_s00040p00195730 Amborella trichopoda AMTR_s00040p00195730 I 0.682
VIT_06s0061g01390 Vitis vinifera VIT_06s0061g01390 I 0.681
GRMZM2G042756 Zea mays GRMZM2G042756 I 0.680
PGSC0003DMG400038366 Solanum tuberosum PGSC0003DMG400038366 I 0.680
Sb06g025900 Sorghum bicolor Sb06g025900 I 0.680
Si011005m.g Setaria italica Si011005m.g I 0.680
Eucgr.A02825 Eucalyptus grandis Eucgr.A02825 I 0.679
Bo8g050800 Brassica oleracea Bo8g050800 I 0.678
Bra010460 Brassica rapa Bra010460 I 0.678
Pavir.Ga00931 Panicum virgatum Pavir.Ga00931 I 0.678
Lus10019455.g Linum usitatissimum Lus10019455.g I 0.677