GSMUA_Achr2G20280_001 (Musa acuminata)
AP2

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00847 (AP2) IPR001471 GSMUA_Achr2G20280_001 T002333_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
DREB1C
M01623_2.00 		Arabidopsis thaliana
RCCGACAT
ATGTCGGY		 PBM
Weirauch et al.(2014)
pTH8187 		0.684 0.720
DREB1C
M06639_2.00 		Arabidopsis thaliana
NNNHBRCCGACATNN
NNATGTCGGYVDNNN		 Dap-seq
OMalley et al.(2016)
CBF2_col_a 		0.684 0.720
DREB1C
M06640_2.00 		Arabidopsis thaliana
NYBRCCGACATVN
NBATGTCGGYVRN		 Dap-seq
OMalley et al.(2016)
CBF2_colamp_a 		0.684 0.720
DREB1D
M06678_2.00 		Arabidopsis thaliana
NHBRCCGACRTNN
NNAYGTCGGYVDN		 Dap-seq
OMalley et al.(2016)
CBF4_col_a 		0.683 0.740
DREB1D
M06679_2.00 		Arabidopsis thaliana
HYRCCGACATND
HNATGTCGGYRD		 Dap-seq
OMalley et al.(2016)
CBF4_colamp_a 		0.683 0.740
For this family, TFs with SR scores > 0.677 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
GSMUA_Achr2P20280_001 AP2 50 101

Links

Other AP2 family TFs
Other Musa acuminata TFs

40 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
GSMUA_Achr10G15510_001 Musa acuminata GSMUA_Achr10G15510_001 I 0.737
POPTR_0004s19820 Populus trichocarpa POPTR_0004s19820 I 0.717
GLYMA13G39540 Glycine max GLYMA13G39540 I 0.712
POPTR_0009s14990 Populus trichocarpa POPTR_0009s14990 I 0.710
SapurV1A.0219s0320 Salix purpurea SapurV1A.0219s0320 I 0.710
GLYMA12G30740 Glycine max GLYMA12G30740 I 0.709
POPTR_0001s08710 Populus trichocarpa POPTR_0001s08710 I 0.708
AMTR_s00095p00096190 Amborella trichopoda AMTR_s00095p00096190 I 0.703
cassava41192.m1 Manihot esculenta cassava41192.m1 I 0.701
GSMUA_Achr11G21630_001 Musa acuminata GSMUA_Achr11G21630_001 I 0.693
GSMUA_Achr8G11980_001 Musa acuminata GSMUA_Achr8G11980_001 I 0.693
MTR_2g085015 Medicago truncatula MTR_2g085015 I 0.692
POPTR_0001s08720 Populus trichocarpa POPTR_0001s08720 I 0.690
SapurV1A.0282s0070 Salix purpurea SapurV1A.0282s0070 I 0.690
VIT_02s0025g04460 Vitis vinifera VIT_02s0025g04460 I 0.687
SapurV1A.0045s0710 Salix purpurea SapurV1A.0045s0710 I 0.687
SapurV1A.0282s0080 Salix purpurea SapurV1A.0282s0080 I 0.687
cassava18935.valid.m1 Manihot esculenta cassava18935.valid.m1 I 0.686
Aquca_122_00013 Aquilegia coerulea Aquca_122_00013 I 0.685
DREB1C Arabidopsis thaliana AT4G25470 D 0.684
Cla002362 Citrullus lanatus Cla002362 I 0.684
DREB1D Arabidopsis thaliana AT5G51990 D 0.683
Bo9g104770 Brassica oleracea Bo9g104770 I 0.683
Bra028290 Brassica rapa Bra028290 I 0.683
CBF4 Arabidopsis lyrata scaffold_801637.1 I 0.683
Bostr.15774s0346 Boechera stricta Bostr.15774s0346 I 0.683
Cagra.0094s0011 Capsella grandiflora Cagra.0094s0011 I 0.683
Carubv10027759m.g Capsella rubella Carubv10027759m.g I 0.683
Thhalv10015252m.g Eutrema salsugineum Thhalv10015252m.g I 0.683
Aquca_122_00012 Aquilegia coerulea Aquca_122_00012 I 0.682
Solyc03g026270.1 Solanum lycopersicum Solyc03g026270.1 I 0.680
30147.m014313 Ricinus communis 30147.m014313 I 0.679
Cucsa.251030 Cucumis sativus Cucsa.251030 I 0.679
Cagra.2248s0026 Capsella grandiflora Cagra.2248s0026 I 0.679
GSMUA_Achr6G13340_001 Musa acuminata GSMUA_Achr6G13340_001 I 0.678
Lus10001871.g Linum usitatissimum Lus10001871.g I 0.677
Lus10006332.g Linum usitatissimum Lus10006332.g I 0.677
Lus10006334.g Linum usitatissimum Lus10006334.g I 0.677
Lus10029601.g Linum usitatissimum Lus10029601.g I 0.677
Lus10029602.g Linum usitatissimum Lus10029602.g I 0.677