Bra028290 (Brassica rapa)
AP2

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00847 (AP2) IPR001471 Bra028290 T001188_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
DREB1D
M06678_2.00 		Arabidopsis thaliana
NHBRCCGACRTNN
NNAYGTCGGYVDN		 Dap-seq
OMalley et al.(2016)
CBF4_col_a 		0.839 1.000
DREB1D
M06679_2.00 		Arabidopsis thaliana
HYRCCGACATND
HNATGTCGGYRD		 Dap-seq
OMalley et al.(2016)
CBF4_colamp_a 		0.839 1.000
DREB1C
M01623_2.00 		Arabidopsis thaliana
RCCGACAT
ATGTCGGY		 PBM
Weirauch et al.(2014)
pTH8187 		0.800 0.920
DREB1C
M06639_2.00 		Arabidopsis thaliana
NNNHBRCCGACATNN
NNATGTCGGYVDNNN		 Dap-seq
OMalley et al.(2016)
CBF2_col_a 		0.800 0.920
DREB1C
M06640_2.00 		Arabidopsis thaliana
NYBRCCGACATVN
NBATGTCGGYVRN		 Dap-seq
OMalley et al.(2016)
CBF2_colamp_a 		0.800 0.920
DREB1A
M01624_2.00 		Arabidopsis thaliana
NRCCGACNNN
NNNGTCGGYN		 PBM
Weirauch et al.(2014)
pTH8163 		0.778 0.940
DREB1A
M01625_2.00 		Arabidopsis thaliana
NNRCCGACNW
WNGTCGGYNN		 PBM
Weirauch et al.(2014)
pTH9718 		0.778 0.940
DREB1A
M06641_2.00 		Arabidopsis thaliana
HNYBRCCGACDWNN
NNWHGTCGGYVRND		 Dap-seq
OMalley et al.(2016)
CBF3_col_a 		0.778 0.940
DREB1A
M06642_2.00 		Arabidopsis thaliana
YBRCCGACATN
NATGTCGGYVR		 Dap-seq
OMalley et al.(2016)
CBF3_colamp_a 		0.778 0.940
DREB1B
M06643_2.00 		Arabidopsis thaliana
DHBRCCGACRHN
NDYGTCGGYVDH		 Dap-seq
OMalley et al.(2016)
CBF1_col_a 		0.715 0.940
DREB1B
M06644_2.00 		Arabidopsis thaliana
NNNHBRCCGACAWNN
NNWTGTCGGYVDNNN		 Dap-seq
OMalley et al.(2016)
CBF1_colamp_a 		0.715 0.940
DREB1G
M01635_2.00 		Oryza sativa
NYGCCGACAN
NTGTCGGCRN		 PBM
Weirauch et al.(2014)
pTH8352 		0.714 0.800
DREB1G
M09707_2.00 		Oryza sativa Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$DREB1G_01 		0.714 0.800
DREB1F
M00962_2.00 		Arabidopsis thaliana
NRCCGACNN
NNGTCGGYN		 PBM
LehtiShiu et al.(2015)
DDF1_Arabidopsis_thaliana 		0.701 0.760
DREB1F
M00840_2.00 		Arabidopsis thaliana
NRYCGACNN
NNGTCGRYN		 PBM
Franco-Zorrilla et al.(2014)
DDF1 		0.701 0.760
DDF1
M00964_2.00 		Arabidopsis lyrata
NRYCGACDY
RHGTCGRYN		 PBM
LehtiShiu et al.(2015)
DDF1_Arabidopsis_lyrata 		0.701 0.760
DREB1F
M06564_2.00 		Arabidopsis thaliana
NHNHYGYCGACATNN
NNATGTCGRCRDNDN		 Dap-seq
OMalley et al.(2016)
DDF1_col_a 		0.701 0.760
DREB1F
M06565_2.00 		Arabidopsis thaliana
HNDNNRYCGACAH
DTGTCGRYNNHND		 Dap-seq
OMalley et al.(2016)
DDF1_colamp_a 		0.701 0.760
DREB1F
M09701_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$DREB1F_03 		0.701 0.760
DREB1E
M09709_2.00 		Oryza sativa Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$DREB1E_01 		0.700 0.800
Q8S2T3_BRANA
M09745_2.00 		Brassica napus Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$CBF16_01 		0.699 0.880
Q6T3U0_BRANA
M09743_2.00 		Brassica napus Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$DREBII1_01 		0.699 0.880
Q8S2T5_BRANA
M09746_2.00 		Brassica napus Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$CBF5_01 		0.693 0.900
ddf2
M00965_2.00 		Arabidopsis lyrata
NRYCGACAT
ATGTCGRYN		 PBM
LehtiShiu et al.(2015)
DDF2_Arabidopsis_lyrata 		0.678 0.760
For this family, TFs with SR scores > 0.677 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Bra028290.1-P AP2 52 103

Links

Other AP2 family TFs
Other Brassica rapa TFs

216 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
DREB1D Arabidopsis thaliana AT5G51990 D 0.839
Bo9g104770 Brassica oleracea Bo9g104770 I 0.839
CBF4 Arabidopsis lyrata scaffold_801637.1 I 0.839
Bostr.15774s0346 Boechera stricta Bostr.15774s0346 I 0.839
Cagra.0094s0011 Capsella grandiflora Cagra.0094s0011 I 0.839
Carubv10027759m.g Capsella rubella Carubv10027759m.g I 0.839
Thhalv10015252m.g Eutrema salsugineum Thhalv10015252m.g I 0.839
cassava18935.valid.m1 Manihot esculenta cassava18935.valid.m1 I 0.836
Cla002362 Citrullus lanatus Cla002362 I 0.826
POPTR_0012s13870 Populus trichocarpa POPTR_0012s13870 I 0.807
cassava35062.m1 Manihot esculenta cassava35062.m1 I 0.807
Gorai.007G010100 Gossypium raimondii Gorai.007G010100 I 0.807
Bostr.7867s0360 Boechera stricta Bostr.7867s0360 I 0.804
Thhalv10027405m.g Eutrema salsugineum Thhalv10027405m.g I 0.804
POPTR_0015s13830 Populus trichocarpa POPTR_0015s13830 I 0.801
mgf026642m Mimulus guttatus mgf026642m I 0.801
Cagra.2248s0026 Capsella grandiflora Cagra.2248s0026 I 0.801
DREB1C Arabidopsis thaliana AT4G25470 D 0.800
Solyc03g026280.2 Solanum lycopersicum Solyc03g026280.2 I 0.799
PGSC0003DMG400014310 Solanum tuberosum PGSC0003DMG400014310 I 0.798
PGSC0003DMG400014309 Solanum tuberosum PGSC0003DMG400014309 I 0.795
Solyc03g026270.1 Solanum lycopersicum Solyc03g026270.1 I 0.795
Cucsa.251030 Cucumis sativus Cucsa.251030 I 0.795
gene13329-v1.0-hybrid Fragaria vesca gene13329-v1.0-hybrid I 0.795
PK23332.1 Cannabis sativa PK23332.1 I 0.795
Cla006315 Citrullus lanatus Cla006315 I 0.793
Solyc03g124110.1 Solanum lycopersicum Solyc03g124110.1 I 0.789
Cucsa.302750 Cucumis sativus Cucsa.302750 I 0.789
PGSC0003DMG400014311 Solanum tuberosum PGSC0003DMG400014311 I 0.787
SapurV1A.0068s0560 Salix purpurea SapurV1A.0068s0560 I 0.786
GLYMA12G30740 Glycine max GLYMA12G30740 I 0.785
SapurV1A.0400s0160 Salix purpurea SapurV1A.0400s0160 I 0.785
PRUPE_ppa010935mg Prunus persica PRUPE_ppa010935mg I 0.782
GLYMA09G27180 Glycine max GLYMA09G27180 I 0.781
30147.m014313 Ricinus communis 30147.m014313 I 0.781
Eucgr.D01925 Eucalyptus grandis Eucgr.D01925 I 0.779
DREB1A Arabidopsis thaliana AT4G25480 D 0.778
Bostr.7867s0359 Boechera stricta Bostr.7867s0359 I 0.778
Bostr.7867s0361 Boechera stricta Bostr.7867s0361 I 0.778
Cagra.28753s0001 Capsella grandiflora Cagra.28753s0001 I 0.778
Carubv10005709m.g Capsella rubella Carubv10005709m.g I 0.778
Cucsa.166340 Cucumis sativus Cucsa.166340 I 0.776
CBF2 Arabidopsis lyrata fgenesh2_kg.7__1712__AT4G25470.1 I 0.772
VIT_16s0100g00380 Vitis vinifera VIT_16s0100g00380 I 0.772
GLYMA13G39540 Glycine max GLYMA13G39540 I 0.770
Eucgr.E00529 Eucalyptus grandis Eucgr.E00529 I 0.766
orange1.1g029015m.g Citrus sinensis orange1.1g029015m.g I 0.766
POPTR_0001s08710 Populus trichocarpa POPTR_0001s08710 I 0.764
cassava41192.m1 Manihot esculenta cassava41192.m1 I 0.764
gene32378-v1.0-hybrid Fragaria vesca gene32378-v1.0-hybrid I 0.764
30190.m011120 Ricinus communis 30190.m011120 I 0.761
evm.TU.supercontig_74.84 Carica papaya evm.TU.supercontig_74.84 I 0.761
MDP0000154764 Malus domestica MDP0000154764 I 0.759
mgf017136m Mimulus guttatus mgf017136m I 0.758
MDP0000198054 Malus domestica MDP0000198054 I 0.757
PRUPE_ppa010800mg Prunus persica PRUPE_ppa010800mg I 0.756
Cla011674 Citrullus lanatus Cla011674 I 0.756
Pm023775 Prunus mume Pm023775 I 0.756
Lus10031657.g Linum usitatissimum Lus10031657.g I 0.756
Gorai.006G046200 Gossypium raimondii Gorai.006G046200 I 0.755
MTR_2g085015 Medicago truncatula MTR_2g085015 I 0.754
VIT_02s0025g04460 Vitis vinifera VIT_02s0025g04460 I 0.754
Lus10027412.g Linum usitatissimum Lus10027412.g I 0.753
GSMUA_Achr11G21630_001 Musa acuminata GSMUA_Achr11G21630_001 I 0.752
POPTR_0001s08720 Populus trichocarpa POPTR_0001s08720 I 0.752
SapurV1A.0282s0070 Salix purpurea SapurV1A.0282s0070 I 0.752
Carubv10006965m.g Capsella rubella Carubv10006965m.g I 0.749
Gorai.008G243600 Gossypium raimondii Gorai.008G243600 I 0.749
GLYMA10G38440 Glycine max GLYMA10G38440 I 0.748
Eucgr.A02818 Eucalyptus grandis Eucgr.A02818 I 0.748
Aquca_012_00144 Aquilegia coerulea Aquca_012_00144 I 0.747
TCM_016175 Theobroma cacao TCM_016175 I 0.746
PRUPE_ppa010909mg Prunus persica PRUPE_ppa010909mg I 0.745
MTR_6g466130 Medicago truncatula MTR_6g466130 I 0.743
SapurV1A.0045s0710 Salix purpurea SapurV1A.0045s0710 I 0.743
SapurV1A.0282s0080 Salix purpurea SapurV1A.0282s0080 I 0.743
mgf019061m Mimulus guttatus mgf019061m I 0.742
GLYMA20G29410 Glycine max GLYMA20G29410 I 0.741
PRUPE_ppa021197mg Prunus persica PRUPE_ppa021197mg I 0.741
Pm023769 Prunus mume Pm023769 I 0.741
mgf026339m Mimulus guttatus mgf026339m I 0.741
Ciclev10007068m.g Citrus clementina Ciclev10007068m.g I 0.741
orange1.1g028094m.g Citrus sinensis orange1.1g028094m.g I 0.741
MTR_6g465510 Medicago truncatula MTR_6g465510 I 0.740
Aquca_013_00435 Aquilegia coerulea Aquca_013_00435 I 0.740
Aquca_013_00436 Aquilegia coerulea Aquca_013_00436 I 0.738
MTR_6g465690 Medicago truncatula MTR_6g465690 I 0.736
MTR_6g466000 Medicago truncatula MTR_6g466000 I 0.736
MTR_1g101600 Medicago truncatula MTR_1g101600 I 0.735
60638.m00016 Ricinus communis 60638.m00016 I 0.734
GLYMA11G19341 Glycine max GLYMA11G19341 I 0.733
Pm023772 Prunus mume Pm023772 I 0.733
Aquca_122_00012 Aquilegia coerulea Aquca_122_00012 I 0.733
MTR_8g006410 Medicago truncatula MTR_8g006410 I 0.732
PGSC0003DMG400004255 Solanum tuberosum PGSC0003DMG400004255 I 0.729
Ciclev10021923m.g Citrus clementina Ciclev10021923m.g I 0.729
MTR_6g465420 Medicago truncatula MTR_6g465420 I 0.727
MTR_6g465430 Medicago truncatula MTR_6g465430 I 0.727
PGSC0003DMG400012525 Solanum tuberosum PGSC0003DMG400012525 I 0.727
Ca_18948 Cicer arietinum Ca_18948 I 0.727
GLYMA12G09130 Glycine max GLYMA12G09130 I 0.726
Eucgr.A02820 Eucalyptus grandis Eucgr.A02820 I 0.726
Eucgr.A02824 Eucalyptus grandis Eucgr.A02824 I 0.726
Eucgr.A02826 Eucalyptus grandis Eucgr.A02826 I 0.726
Eucgr.A02832 Eucalyptus grandis Eucgr.A02832 I 0.726
MTR_6g465460 Medicago truncatula MTR_6g465460 I 0.725
GSMUA_Achr8G11980_001 Musa acuminata GSMUA_Achr8G11980_001 I 0.723
Aquca_122_00013 Aquilegia coerulea Aquca_122_00013 I 0.723
Lus10001871.g Linum usitatissimum Lus10001871.g I 0.723
Lus10006332.g Linum usitatissimum Lus10006332.g I 0.723
Lus10006334.g Linum usitatissimum Lus10006334.g I 0.723
Lus10029601.g Linum usitatissimum Lus10029601.g I 0.723
Lus10029602.g Linum usitatissimum Lus10029602.g I 0.723
POPTR_0004s19820 Populus trichocarpa POPTR_0004s19820 I 0.722
POPTR_0009s14990 Populus trichocarpa POPTR_0009s14990 I 0.722
Eucgr.A02822 Eucalyptus grandis Eucgr.A02822 I 0.722
orange1.1g026103m.g Citrus sinensis orange1.1g026103m.g I 0.722
SapurV1A.0219s0320 Salix purpurea SapurV1A.0219s0320 I 0.722
30190.m011119 Ricinus communis 30190.m011119 I 0.721
VIT_06s0061g01400 Vitis vinifera VIT_06s0061g01400 I 0.720
mgf016974m Mimulus guttatus mgf016974m I 0.720
mgf018631m Mimulus guttatus mgf018631m I 0.720
mgf018934m Mimulus guttatus mgf018934m I 0.720
mgf022408m Mimulus guttatus mgf022408m I 0.720
Eucgr.A02831 Eucalyptus grandis Eucgr.A02831 I 0.720
chr3.LjT42M03.60.nd Lotus japonicus chr3.LjT42M03.60.nd I 0.720
BRADI3G51630 Brachypodium distachyon BRADI3G51630 I 0.719
GSMUA_Achr4G19660_001 Musa acuminata GSMUA_Achr4G19660_001 I 0.719
MLOC_75886 Hordeum vulgare MLOC_75886 I 0.719
MTR_6g465450 Medicago truncatula MTR_6g465450 I 0.719
chr2.CM0304.640.nd Lotus japonicus chr2.CM0304.640.nd I 0.719
Eucgr.A02827 Eucalyptus grandis Eucgr.A02827 I 0.716
Eucgr.A02834 Eucalyptus grandis Eucgr.A02834 I 0.716
DREB1B Arabidopsis thaliana AT4G25490 D 0.715
Eucgr.A02821 Eucalyptus grandis Eucgr.A02821 I 0.715
DREB1G Oryza indica BGIOSGA008804 I 0.714
GRMZM2G137341 Zea mays GRMZM2G137341 I 0.714
LPERR02G22610 Leersia perrieri LPERR02G22610 I 0.714
MTR_6g465530 Medicago truncatula MTR_6g465530 I 0.714
OBART02G27760 Oryza barthii OBART02G27760 I 0.714
OGLUM02G28340 Oryza glumaepatula OGLUM02G28340 I 0.714
OMERI02G26980 Oryza meridionalis OMERI02G26980 I 0.714
ONIVA02G30790 Oryza nivara ONIVA02G30790 I 0.714
OPUNC02G25480 Oryza punctata OPUNC02G25480 I 0.714
ORUFI02G29230 Oryza rufipogon ORUFI02G29230 I 0.714
DREB1G Oryza sativa OS02G0677300 D 0.714
Sb04g031950 Sorghum bicolor Sb04g031950 I 0.714
Pavir.Aa00912 Panicum virgatum Pavir.Aa00912 I 0.714
Pavir.Ab02685 Panicum virgatum Pavir.Ab02685 I 0.714
Ca_04504 Cicer arietinum Ca_04504 I 0.713
LjSGA_037211.1 Lotus japonicus LjSGA_037211.1 I 0.713
MTR_6g465850 Medicago truncatula MTR_6g465850 I 0.710
AMTR_s00095p00096190 Amborella trichopoda AMTR_s00095p00096190 I 0.709
Bo01335s010 Brassica oleracea Bo01335s010 I 0.707
Bra016763 Brassica rapa Bra016763 I 0.707
cassava17064.m1 Manihot esculenta cassava17064.m1 I 0.706
PGSC0003DMG400012524 Solanum tuberosum PGSC0003DMG400012524 I 0.704
Si018262m.g Setaria italica Si018262m.g I 0.704
VIT_11s0016g02140 Vitis vinifera VIT_11s0016g02140 I 0.703
Aquca_013_00434 Aquilegia coerulea Aquca_013_00434 I 0.703
evm.TU.supercontig_5.66 Carica papaya evm.TU.supercontig_5.66 I 0.703
Thhalv10009978m.g Eutrema salsugineum Thhalv10009978m.g I 0.703
Bra022770 Brassica rapa Bra022770 I 0.702
Pm019386 Prunus mume Pm019386 I 0.702
cassava41218.m1 Manihot esculenta cassava41218.m1 I 0.702
DREB1F Arabidopsis thaliana AT1G12610 D 0.701
DDF1 Arabidopsis lyrata fgenesh2_kg.1__1363__AT1G12610.1 D 0.701
Solyc08g007820.1 Solanum lycopersicum Solyc08g007820.1 I 0.701
DREB1E Oryza indica BGIOSGA016950 I 0.700
LPERR04G18190 Leersia perrieri LPERR04G18190 I 0.700
OBART04G22220 Oryza barthii OBART04G22220 I 0.700
OGLUM04G22260 Oryza glumaepatula OGLUM04G22260 I 0.700
OMERI04G18770 Oryza meridionalis OMERI04G18770 I 0.700
ONIVA04G20840 Oryza nivara ONIVA04G20840 I 0.700
OPUNC04G19970 Oryza punctata OPUNC04G19970 I 0.700
ORGLA04G0192900 Oryza glaberrima ORGLA04G0192900 I 0.700
ORUFI04G23890 Oryza rufipogon ORUFI04G23890 I 0.700
DREB1E Oryza sativa OS04G0572400 D 0.700
Bo7g110320 Brassica oleracea Bo7g110320 I 0.699
Bra019162 Brassica rapa Bra019162 I 0.699
Q6T3U0_BRANA Brassica napus Q6T3U0_BRANA D 0.699
Q8S2T3_BRANA Brassica napus Q8S2T3_BRANA D 0.699
Bo8g108050 Brassica oleracea Bo8g108050 I 0.698
Bra026963 Brassica rapa Bra026963 I 0.698
Carubv10006809m.g Capsella rubella Carubv10006809m.g I 0.698
PRUPE_ppa017761mg Prunus persica PRUPE_ppa017761mg I 0.697
VIT_06s0061g01390 Vitis vinifera VIT_06s0061g01390 I 0.694
Bo3g024240 Brassica oleracea Bo3g024240 I 0.693
Cagra.0568s0171 Capsella grandiflora Cagra.0568s0171 I 0.693
Cagra.2248s0025 Capsella grandiflora Cagra.2248s0025 I 0.693
Carubv10010303m.g Capsella rubella Carubv10010303m.g I 0.693
Q8S2T5_BRANA Brassica napus Q8S2T5_BRANA D 0.693
Eucgr.A02825 Eucalyptus grandis Eucgr.A02825 I 0.692
Bo8g050800 Brassica oleracea Bo8g050800 I 0.691
Bra010460 Brassica rapa Bra010460 I 0.691
Gorai.003G162700 Gossypium raimondii Gorai.003G162700 I 0.691
Solyc01g009440.1 Solanum lycopersicum Solyc01g009440.1 I 0.690
Bostr.13671s0200 Boechera stricta Bostr.13671s0200 I 0.690
Lus10019455.g Linum usitatissimum Lus10019455.g I 0.690
GRMZM2G042756 Zea mays GRMZM2G042756 I 0.689
GSMUA_Achr10G15510_001 Musa acuminata GSMUA_Achr10G15510_001 I 0.689
Sb06g025900 Sorghum bicolor Sb06g025900 I 0.689
Si011005m.g Setaria italica Si011005m.g I 0.689
MTR_5g010930 Medicago truncatula MTR_5g010930 I 0.688
Pavir.Ga00931 Panicum virgatum Pavir.Ga00931 I 0.687
Ca_08732 Cicer arietinum Ca_08732 I 0.686
Eucgr.A02830 Eucalyptus grandis Eucgr.A02830 I 0.685
GLYMA12G30710 Glycine max GLYMA12G30710 I 0.684
GSMUA_Achr2G20280_001 Musa acuminata GSMUA_Achr2G20280_001 I 0.683
GSMUA_Achr7G05900_001 Musa acuminata GSMUA_Achr7G05900_001 I 0.682
GLYMA01G42500 Glycine max GLYMA01G42500 I 0.679
VIT_08s0007g03790 Vitis vinifera VIT_08s0007g03790 I 0.679
ddf2 Arabidopsis lyrata fgenesh2_kg.2__175__AT1G63030.1 D 0.678
PGSC0003DMG400038366 Solanum tuberosum PGSC0003DMG400038366 I 0.678
Bostr.22157s0019 Boechera stricta Bostr.22157s0019 I 0.678
Thhalv10023865m.g Eutrema salsugineum Thhalv10023865m.g I 0.678