MDP0000198054 (Malus domestica)
AP2

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00847 (AP2) IPR001471 MDP0000198054 T009020_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
DREB1D
M06678_2.00 		Arabidopsis thaliana
NHBRCCGACRTNN
NNAYGTCGGYVDN		 Dap-seq
OMalley et al.(2016)
CBF4_col_a 		0.757 0.824
DREB1D
M06679_2.00 		Arabidopsis thaliana
HYRCCGACATND
HNATGTCGGYRD		 Dap-seq
OMalley et al.(2016)
CBF4_colamp_a 		0.757 0.824
DREB1A
M01624_2.00 		Arabidopsis thaliana
NRCCGACNNN
NNNGTCGGYN		 PBM
Weirauch et al.(2014)
pTH8163 		0.754 0.804
DREB1A
M01625_2.00 		Arabidopsis thaliana
NNRCCGACNW
WNGTCGGYNN		 PBM
Weirauch et al.(2014)
pTH9718 		0.754 0.804
DREB1A
M06641_2.00 		Arabidopsis thaliana
HNYBRCCGACDWNN
NNWHGTCGGYVRND		 Dap-seq
OMalley et al.(2016)
CBF3_col_a 		0.754 0.804
DREB1A
M06642_2.00 		Arabidopsis thaliana
YBRCCGACATN
NATGTCGGYVR		 Dap-seq
OMalley et al.(2016)
CBF3_colamp_a 		0.754 0.804
DREB1F
M00962_2.00 		Arabidopsis thaliana
NRCCGACNN
NNGTCGGYN		 PBM
LehtiShiu et al.(2015)
DDF1_Arabidopsis_thaliana 		0.722 0.745
DREB1F
M00840_2.00 		Arabidopsis thaliana
NRYCGACNN
NNGTCGRYN		 PBM
Franco-Zorrilla et al.(2014)
DDF1 		0.722 0.745
DDF1
M00964_2.00 		Arabidopsis lyrata
NRYCGACDY
RHGTCGRYN		 PBM
LehtiShiu et al.(2015)
DDF1_Arabidopsis_lyrata 		0.722 0.745
DREB1F
M06564_2.00 		Arabidopsis thaliana
NHNHYGYCGACATNN
NNATGTCGRCRDNDN		 Dap-seq
OMalley et al.(2016)
DDF1_col_a 		0.722 0.745
DREB1F
M06565_2.00 		Arabidopsis thaliana
HNDNNRYCGACAH
DTGTCGRYNNHND		 Dap-seq
OMalley et al.(2016)
DDF1_colamp_a 		0.722 0.745
DREB1F
M09701_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$DREB1F_03 		0.722 0.745
DREB1C
M01623_2.00 		Arabidopsis thaliana
RCCGACAT
ATGTCGGY		 PBM
Weirauch et al.(2014)
pTH8187 		0.719 0.765
DREB1C
M06639_2.00 		Arabidopsis thaliana
NNNHBRCCGACATNN
NNATGTCGGYVDNNN		 Dap-seq
OMalley et al.(2016)
CBF2_col_a 		0.719 0.765
DREB1C
M06640_2.00 		Arabidopsis thaliana
NYBRCCGACATVN
NBATGTCGGYVRN		 Dap-seq
OMalley et al.(2016)
CBF2_colamp_a 		0.719 0.765
DREB1G
M01635_2.00 		Oryza sativa
NYGCCGACAN
NTGTCGGCRN		 PBM
Weirauch et al.(2014)
pTH8352 		0.709 0.725
DREB1G
M09707_2.00 		Oryza sativa Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$DREB1G_01 		0.709 0.725
ddf2
M00965_2.00 		Arabidopsis lyrata
NRYCGACAT
ATGTCGRYN		 PBM
LehtiShiu et al.(2015)
DDF2_Arabidopsis_lyrata 		0.690 0.706
For this family, TFs with SR scores > 0.677 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
MDP0000198054 AP2 160 212

Links

Other AP2 family TFs
Other Malus domestica TFs

184 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
PRUPE_ppa010800mg Prunus persica PRUPE_ppa010800mg I 0.867
Pm023775 Prunus mume Pm023775 I 0.867
PRUPE_ppa010909mg Prunus persica PRUPE_ppa010909mg I 0.864
MDP0000154764 Malus domestica MDP0000154764 I 0.864
Pm023772 Prunus mume Pm023772 I 0.852
Gorai.008G243600 Gossypium raimondii Gorai.008G243600 I 0.844
gene32378-v1.0-hybrid Fragaria vesca gene32378-v1.0-hybrid I 0.834
PRUPE_ppa021197mg Prunus persica PRUPE_ppa021197mg I 0.832
Pm023769 Prunus mume Pm023769 I 0.832
Eucgr.D01925 Eucalyptus grandis Eucgr.D01925 I 0.819
Cla011674 Citrullus lanatus Cla011674 I 0.818
VIT_02s0025g04460 Vitis vinifera VIT_02s0025g04460 I 0.816
PRUPE_ppa017761mg Prunus persica PRUPE_ppa017761mg I 0.808
TCM_016175 Theobroma cacao TCM_016175 I 0.800
cassava41192.m1 Manihot esculenta cassava41192.m1 I 0.799
30190.m011120 Ricinus communis 30190.m011120 I 0.795
60638.m00016 Ricinus communis 60638.m00016 I 0.794
Cucsa.302750 Cucumis sativus Cucsa.302750 I 0.794
orange1.1g029015m.g Citrus sinensis orange1.1g029015m.g I 0.794
PGSC0003DMG400012525 Solanum tuberosum PGSC0003DMG400012525 I 0.793
Ciclev10021923m.g Citrus clementina Ciclev10021923m.g I 0.793
evm.TU.supercontig_74.84 Carica papaya evm.TU.supercontig_74.84 I 0.790
POPTR_0012s13870 Populus trichocarpa POPTR_0012s13870 I 0.789
PRUPE_ppa014628mg Prunus persica PRUPE_ppa014628mg N 0.789
cassava35062.m1 Manihot esculenta cassava35062.m1 I 0.789
Gorai.007G010100 Gossypium raimondii Gorai.007G010100 I 0.789
POPTR_0001s08720 Populus trichocarpa POPTR_0001s08720 I 0.785
cassava17064.m1 Manihot esculenta cassava17064.m1 I 0.785
SapurV1A.0282s0070 Salix purpurea SapurV1A.0282s0070 I 0.785
Lus10017829.g Linum usitatissimum Lus10017829.g I 0.784
POPTR_0015s13830 Populus trichocarpa POPTR_0015s13830 I 0.783
mgf026642m Mimulus guttatus mgf026642m I 0.783
Cagra.2248s0026 Capsella grandiflora Cagra.2248s0026 I 0.783
Cucsa.251030 Cucumis sativus Cucsa.251030 I 0.781
Bostr.7867s0360 Boechera stricta Bostr.7867s0360 I 0.780
Thhalv10027405m.g Eutrema salsugineum Thhalv10027405m.g I 0.780
GLYMA09G27180 Glycine max GLYMA09G27180 I 0.779
Cla006315 Citrullus lanatus Cla006315 I 0.779
Eucgr.E00529 Eucalyptus grandis Eucgr.E00529 I 0.779
POPTR_0001s08710 Populus trichocarpa POPTR_0001s08710 I 0.778
gene13329-v1.0-hybrid Fragaria vesca gene13329-v1.0-hybrid I 0.777
PK23332.1 Cannabis sativa PK23332.1 I 0.777
LjSGA_037211.1 Lotus japonicus LjSGA_037211.1 I 0.772
GSMUA_Achr11G21630_001 Musa acuminata GSMUA_Achr11G21630_001 I 0.770
PGSC0003DMG400004255 Solanum tuberosum PGSC0003DMG400004255 I 0.768
Aquca_013_00435 Aquilegia coerulea Aquca_013_00435 I 0.768
SapurV1A.0068s0560 Salix purpurea SapurV1A.0068s0560 I 0.768
Solyc08g007820.1 Solanum lycopersicum Solyc08g007820.1 I 0.767
SapurV1A.0400s0160 Salix purpurea SapurV1A.0400s0160 I 0.767
PRUPE_ppa010935mg Prunus persica PRUPE_ppa010935mg I 0.764
VIT_11s0016g02140 Vitis vinifera VIT_11s0016g02140 I 0.763
30147.m014313 Ricinus communis 30147.m014313 I 0.763
mgf017136m Mimulus guttatus mgf017136m I 0.763
Lus10001871.g Linum usitatissimum Lus10001871.g I 0.762
Lus10006332.g Linum usitatissimum Lus10006332.g I 0.762
Lus10006334.g Linum usitatissimum Lus10006334.g I 0.762
Lus10029601.g Linum usitatissimum Lus10029601.g I 0.762
Lus10029602.g Linum usitatissimum Lus10029602.g I 0.762
cassava18935.valid.m1 Manihot esculenta cassava18935.valid.m1 I 0.761
GLYMA12G30740 Glycine max GLYMA12G30740 I 0.760
MTR_5g010930 Medicago truncatula MTR_5g010930 I 0.758
Aquca_013_00436 Aquilegia coerulea Aquca_013_00436 I 0.758
DREB1D Arabidopsis thaliana AT5G51990 D 0.757
Bo9g104770 Brassica oleracea Bo9g104770 I 0.757
Bra028290 Brassica rapa Bra028290 I 0.757
GLYMA17G14111 Glycine max GLYMA17G14111 I 0.757
CBF4 Arabidopsis lyrata scaffold_801637.1 I 0.757
30190.m011119 Ricinus communis 30190.m011119 I 0.757
Bostr.15774s0346 Boechera stricta Bostr.15774s0346 I 0.757
Cagra.0094s0011 Capsella grandiflora Cagra.0094s0011 I 0.757
Carubv10027759m.g Capsella rubella Carubv10027759m.g I 0.757
SapurV1A.0045s0710 Salix purpurea SapurV1A.0045s0710 I 0.757
SapurV1A.0282s0080 Salix purpurea SapurV1A.0282s0080 I 0.757
Thhalv10015252m.g Eutrema salsugineum Thhalv10015252m.g I 0.757
Solyc03g026270.1 Solanum lycopersicum Solyc03g026270.1 I 0.755
DREB1A Arabidopsis thaliana AT4G25480 D 0.754
MTR_6g466130 Medicago truncatula MTR_6g466130 I 0.754
PGSC0003DMG400012524 Solanum tuberosum PGSC0003DMG400012524 I 0.754
VIT_16s0100g00380 Vitis vinifera VIT_16s0100g00380 I 0.754
Solyc03g026280.2 Solanum lycopersicum Solyc03g026280.2 I 0.753
Bostr.7867s0359 Boechera stricta Bostr.7867s0359 I 0.753
Bostr.7867s0361 Boechera stricta Bostr.7867s0361 I 0.753
Cagra.28753s0001 Capsella grandiflora Cagra.28753s0001 I 0.753
Carubv10005709m.g Capsella rubella Carubv10005709m.g I 0.753
POPTR_0009s14990 Populus trichocarpa POPTR_0009s14990 I 0.752
SapurV1A.0219s0320 Salix purpurea SapurV1A.0219s0320 I 0.752
Ca_08732 Cicer arietinum Ca_08732 I 0.751
Aquca_012_00144 Aquilegia coerulea Aquca_012_00144 I 0.751
Solyc03g124110.1 Solanum lycopersicum Solyc03g124110.1 I 0.750
mgf019061m Mimulus guttatus mgf019061m I 0.750
orange1.1g026103m.g Citrus sinensis orange1.1g026103m.g I 0.750
CBF2 Arabidopsis lyrata fgenesh2_kg.7__1712__AT4G25470.1 I 0.747
Carubv10006965m.g Capsella rubella Carubv10006965m.g I 0.747
GLYMA05G03560 Glycine max GLYMA05G03560 I 0.746
Pm023777 Prunus mume Pm023777 N 0.746
GLYMA13G39540 Glycine max GLYMA13G39540 I 0.745
Cla002362 Citrullus lanatus Cla002362 I 0.745
cassava41218.m1 Manihot esculenta cassava41218.m1 I 0.744
MTR_4g102660 Medicago truncatula MTR_4g102660 I 0.743
Aquca_013_00434 Aquilegia coerulea Aquca_013_00434 I 0.742
GSMUA_Achr8G11980_001 Musa acuminata GSMUA_Achr8G11980_001 I 0.741
PGSC0003DMG400014309 Solanum tuberosum PGSC0003DMG400014309 I 0.741
MTR_2g085015 Medicago truncatula MTR_2g085015 I 0.740
PGSC0003DMG400014310 Solanum tuberosum PGSC0003DMG400014310 I 0.738
Gorai.006G046200 Gossypium raimondii Gorai.006G046200 I 0.737
PGSC0003DMG400014311 Solanum tuberosum PGSC0003DMG400014311 I 0.734
Solyc08g007830.1 Solanum lycopersicum Solyc08g007830.1 I 0.734
POPTR_0004s19820 Populus trichocarpa POPTR_0004s19820 I 0.731
GLYMA10G38440 Glycine max GLYMA10G38440 I 0.730
MTR_6g465510 Medicago truncatula MTR_6g465510 I 0.730
Eucgr.A02818 Eucalyptus grandis Eucgr.A02818 I 0.730
Bo01335s010 Brassica oleracea Bo01335s010 I 0.729
Bra016763 Brassica rapa Bra016763 I 0.729
MTR_6g465690 Medicago truncatula MTR_6g465690 I 0.726
MTR_6g466000 Medicago truncatula MTR_6g466000 I 0.726
mgf026339m Mimulus guttatus mgf026339m I 0.726
GLYMA11G19341 Glycine max GLYMA11G19341 I 0.725
GLYMA12G09130 Glycine max GLYMA12G09130 I 0.725
MTR_6g465420 Medicago truncatula MTR_6g465420 I 0.725
MTR_6g465430 Medicago truncatula MTR_6g465430 I 0.725
PGSC0003DMG400012526 Solanum tuberosum PGSC0003DMG400012526 I 0.725
Thhalv10009978m.g Eutrema salsugineum Thhalv10009978m.g I 0.725
VIT_06s0061g01400 Vitis vinifera VIT_06s0061g01400 I 0.724
GLYMA20G29410 Glycine max GLYMA20G29410 I 0.723
Cucsa.166340 Cucumis sativus Cucsa.166340 I 0.723
Ciclev10007068m.g Citrus clementina Ciclev10007068m.g I 0.723
orange1.1g028094m.g Citrus sinensis orange1.1g028094m.g I 0.723
DREB1F Arabidopsis thaliana AT1G12610 D 0.722
DDF1 Arabidopsis lyrata fgenesh2_kg.1__1363__AT1G12610.1 D 0.722
Bo8g108050 Brassica oleracea Bo8g108050 I 0.720
Bra026963 Brassica rapa Bra026963 I 0.720
DREB1C Arabidopsis thaliana AT4G25470 D 0.719
MTR_8g006410 Medicago truncatula MTR_8g006410 I 0.718
GLYMA01G42500 Glycine max GLYMA01G42500 I 0.715
MTR_6g465460 Medicago truncatula MTR_6g465460 I 0.715
Cagra.0568s0171 Capsella grandiflora Cagra.0568s0171 I 0.715
Carubv10010303m.g Capsella rubella Carubv10010303m.g I 0.715
BRADI3G51630 Brachypodium distachyon BRADI3G51630 I 0.714
MLOC_75886 Hordeum vulgare MLOC_75886 I 0.714
Bostr.13671s0200 Boechera stricta Bostr.13671s0200 I 0.712
MTR_5g010910 Medicago truncatula MTR_5g010910 N 0.711
MTR_5g010940 Medicago truncatula MTR_5g010940 N 0.711
DREB1G Oryza indica BGIOSGA008804 I 0.709
GRMZM2G137341 Zea mays GRMZM2G137341 I 0.709
LPERR02G22610 Leersia perrieri LPERR02G22610 I 0.709
OBART02G27760 Oryza barthii OBART02G27760 I 0.709
OGLUM02G28340 Oryza glumaepatula OGLUM02G28340 I 0.709
OMERI02G26980 Oryza meridionalis OMERI02G26980 I 0.709
ONIVA02G30790 Oryza nivara ONIVA02G30790 I 0.709
OPUNC02G25480 Oryza punctata OPUNC02G25480 I 0.709
ORUFI02G29230 Oryza rufipogon ORUFI02G29230 I 0.709
DREB1G Oryza sativa OS02G0677300 D 0.709
Sb04g031950 Sorghum bicolor Sb04g031950 I 0.709
evm.TU.supercontig_5.66 Carica papaya evm.TU.supercontig_5.66 I 0.709
Pavir.Aa00912 Panicum virgatum Pavir.Aa00912 I 0.709
Pavir.Ab02685 Panicum virgatum Pavir.Ab02685 I 0.709
MTR_6g465450 Medicago truncatula MTR_6g465450 I 0.706
MTR_6g465530 Medicago truncatula MTR_6g465530 I 0.704
Ca_18948 Cicer arietinum Ca_18948 I 0.700
Si018262m.g Setaria italica Si018262m.g I 0.699
Aquca_122_00012 Aquilegia coerulea Aquca_122_00012 I 0.698
MTR_1g101600 Medicago truncatula MTR_1g101600 I 0.695
PGSC0003DMG400038366 Solanum tuberosum PGSC0003DMG400038366 I 0.694
Lus10031657.g Linum usitatissimum Lus10031657.g I 0.694
chr3.LjT42M03.60.nd Lotus japonicus chr3.LjT42M03.60.nd I 0.694
AMTR_s00095p00096190 Amborella trichopoda AMTR_s00095p00096190 I 0.693
ddf2 Arabidopsis lyrata fgenesh2_kg.2__175__AT1G63030.1 D 0.690
Bostr.22157s0019 Boechera stricta Bostr.22157s0019 I 0.690
Thhalv10023865m.g Eutrema salsugineum Thhalv10023865m.g I 0.690
MTR_6g465850 Medicago truncatula MTR_6g465850 I 0.689
Gorai.003G162700 Gossypium raimondii Gorai.003G162700 I 0.689
Lus10027412.g Linum usitatissimum Lus10027412.g I 0.689
Aquca_122_00013 Aquilegia coerulea Aquca_122_00013 I 0.686
LjSGA_077560.1 Lotus japonicus LjSGA_077560.1 N 0.686
Solyc01g009440.1 Solanum lycopersicum Solyc01g009440.1 I 0.684
Pm019386 Prunus mume Pm019386 I 0.684
Solyc12g056430.1 Solanum lycopersicum Solyc12g056430.1 I 0.681
GLYMA16G32330 Glycine max GLYMA16G32330 I 0.680
Ca_04504 Cicer arietinum Ca_04504 I 0.680
Eucgr.A02820 Eucalyptus grandis Eucgr.A02820 I 0.679
Eucgr.A02824 Eucalyptus grandis Eucgr.A02824 I 0.679
Eucgr.A02826 Eucalyptus grandis Eucgr.A02826 I 0.679
Eucgr.A02832 Eucalyptus grandis Eucgr.A02832 I 0.679
Eucgr.A02822 Eucalyptus grandis Eucgr.A02822 I 0.678