MTR_6g465450 (Medicago truncatula)
AP2

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00847 (AP2) IPR001471 MTR_6g465450 T002914_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
DREB1D
M06678_2.00 		Arabidopsis thaliana
NHBRCCGACRTNN
NNAYGTCGGYVDN		 Dap-seq
OMalley et al.(2016)
CBF4_col_a 		0.719 0.840
DREB1D
M06679_2.00 		Arabidopsis thaliana
HYRCCGACATND
HNATGTCGGYRD		 Dap-seq
OMalley et al.(2016)
CBF4_colamp_a 		0.719 0.840
DREB1A
M01624_2.00 		Arabidopsis thaliana
NRCCGACNNN
NNNGTCGGYN		 PBM
Weirauch et al.(2014)
pTH8163 		0.708 0.840
DREB1A
M01625_2.00 		Arabidopsis thaliana
NNRCCGACNW
WNGTCGGYNN		 PBM
Weirauch et al.(2014)
pTH9718 		0.708 0.840
DREB1A
M06641_2.00 		Arabidopsis thaliana
HNYBRCCGACDWNN
NNWHGTCGGYVRND		 Dap-seq
OMalley et al.(2016)
CBF3_col_a 		0.708 0.840
DREB1A
M06642_2.00 		Arabidopsis thaliana
YBRCCGACATN
NATGTCGGYVR		 Dap-seq
OMalley et al.(2016)
CBF3_colamp_a 		0.708 0.840
DREB1C
M01623_2.00 		Arabidopsis thaliana
RCCGACAT
ATGTCGGY		 PBM
Weirauch et al.(2014)
pTH8187 		0.698 0.840
DREB1C
M06639_2.00 		Arabidopsis thaliana
NNNHBRCCGACATNN
NNATGTCGGYVDNNN		 Dap-seq
OMalley et al.(2016)
CBF2_col_a 		0.698 0.840
DREB1C
M06640_2.00 		Arabidopsis thaliana
NYBRCCGACATVN
NBATGTCGGYVRN		 Dap-seq
OMalley et al.(2016)
CBF2_colamp_a 		0.698 0.840
DREB1G
M01635_2.00 		Oryza sativa
NYGCCGACAN
NTGTCGGCRN		 PBM
Weirauch et al.(2014)
pTH8352 		0.679 0.740
DREB1G
M09707_2.00 		Oryza sativa Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$DREB1G_01 		0.679 0.740
DREB1F
M00962_2.00 		Arabidopsis thaliana
NRCCGACNN
NNGTCGGYN		 PBM
LehtiShiu et al.(2015)
DDF1_Arabidopsis_thaliana 		0.679 0.740
DREB1F
M00840_2.00 		Arabidopsis thaliana
NRYCGACNN
NNGTCGRYN		 PBM
Franco-Zorrilla et al.(2014)
DDF1 		0.679 0.740
DDF1
M00964_2.00 		Arabidopsis lyrata
NRYCGACDY
RHGTCGRYN		 PBM
LehtiShiu et al.(2015)
DDF1_Arabidopsis_lyrata 		0.679 0.740
DREB1F
M06564_2.00 		Arabidopsis thaliana
NHNHYGYCGACATNN
NNATGTCGRCRDNDN		 Dap-seq
OMalley et al.(2016)
DDF1_col_a 		0.679 0.740
DREB1F
M06565_2.00 		Arabidopsis thaliana
HNDNNRYCGACAH
DTGTCGRYNNHND		 Dap-seq
OMalley et al.(2016)
DDF1_colamp_a 		0.679 0.740
DREB1F
M09701_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$DREB1F_03 		0.679 0.740
For this family, TFs with SR scores > 0.677 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
KEH26591 AP2 52 103

Links

Other AP2 family TFs
Other Medicago truncatula TFs

124 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
MTR_6g465460 Medicago truncatula MTR_6g465460 I 0.835
MTR_6g465510 Medicago truncatula MTR_6g465510 I 0.820
MTR_6g465690 Medicago truncatula MTR_6g465690 I 0.816
MTR_6g466000 Medicago truncatula MTR_6g466000 I 0.816
MTR_6g465420 Medicago truncatula MTR_6g465420 I 0.815
MTR_6g465430 Medicago truncatula MTR_6g465430 I 0.802
MTR_6g466130 Medicago truncatula MTR_6g466130 I 0.785
MTR_6g465530 Medicago truncatula MTR_6g465530 I 0.781
GLYMA09G27180 Glycine max GLYMA09G27180 I 0.758
Solyc03g026270.1 Solanum lycopersicum Solyc03g026270.1 I 0.753
Solyc03g026280.2 Solanum lycopersicum Solyc03g026280.2 I 0.751
mgf026339m Mimulus guttatus mgf026339m I 0.748
Solyc03g124110.1 Solanum lycopersicum Solyc03g124110.1 I 0.747
MTR_6g465850 Medicago truncatula MTR_6g465850 I 0.745
Lus10001871.g Linum usitatissimum Lus10001871.g I 0.736
Lus10006332.g Linum usitatissimum Lus10006332.g I 0.736
Lus10006334.g Linum usitatissimum Lus10006334.g I 0.736
Lus10029601.g Linum usitatissimum Lus10029601.g I 0.736
Lus10029602.g Linum usitatissimum Lus10029602.g I 0.736
mgf026642m Mimulus guttatus mgf026642m I 0.734
POPTR_0001s08710 Populus trichocarpa POPTR_0001s08710 I 0.733
Eucgr.E00529 Eucalyptus grandis Eucgr.E00529 I 0.733
evm.TU.supercontig_74.84 Carica papaya evm.TU.supercontig_74.84 I 0.733
gene13329-v1.0-hybrid Fragaria vesca gene13329-v1.0-hybrid I 0.731
PK23332.1 Cannabis sativa PK23332.1 I 0.731
POPTR_0001s08720 Populus trichocarpa POPTR_0001s08720 I 0.730
TCM_016175 Theobroma cacao TCM_016175 I 0.730
Cla011674 Citrullus lanatus Cla011674 I 0.730
SapurV1A.0282s0070 Salix purpurea SapurV1A.0282s0070 I 0.730
GSMUA_Achr11G21630_001 Musa acuminata GSMUA_Achr11G21630_001 I 0.728
Cucsa.302750 Cucumis sativus Cucsa.302750 I 0.727
gene32378-v1.0-hybrid Fragaria vesca gene32378-v1.0-hybrid I 0.727
MTR_8g006410 Medicago truncatula MTR_8g006410 I 0.726
POPTR_0012s13870 Populus trichocarpa POPTR_0012s13870 I 0.726
cassava35062.m1 Manihot esculenta cassava35062.m1 I 0.726
Eucgr.D01925 Eucalyptus grandis Eucgr.D01925 I 0.726
Gorai.007G010100 Gossypium raimondii Gorai.007G010100 I 0.726
Cla002362 Citrullus lanatus Cla002362 I 0.724
Bostr.7867s0360 Boechera stricta Bostr.7867s0360 I 0.723
Cagra.2248s0026 Capsella grandiflora Cagra.2248s0026 I 0.723
Gorai.008G243600 Gossypium raimondii Gorai.008G243600 I 0.723
Thhalv10027405m.g Eutrema salsugineum Thhalv10027405m.g I 0.723
POPTR_0015s13830 Populus trichocarpa POPTR_0015s13830 I 0.720
DREB1D Arabidopsis thaliana AT5G51990 D 0.719
Bo9g104770 Brassica oleracea Bo9g104770 I 0.719
Bra028290 Brassica rapa Bra028290 I 0.719
PRUPE_ppa010935mg Prunus persica PRUPE_ppa010935mg I 0.719
CBF4 Arabidopsis lyrata scaffold_801637.1 I 0.719
cassava18935.valid.m1 Manihot esculenta cassava18935.valid.m1 I 0.719
Bostr.15774s0346 Boechera stricta Bostr.15774s0346 I 0.719
Cagra.0094s0011 Capsella grandiflora Cagra.0094s0011 I 0.719
Carubv10027759m.g Capsella rubella Carubv10027759m.g I 0.719
Thhalv10015252m.g Eutrema salsugineum Thhalv10015252m.g I 0.719
Cucsa.251030 Cucumis sativus Cucsa.251030 I 0.718
MDP0000154764 Malus domestica MDP0000154764 I 0.718
Cla006315 Citrullus lanatus Cla006315 I 0.716
PGSC0003DMG400004255 Solanum tuberosum PGSC0003DMG400004255 I 0.715
PRUPE_ppa010800mg Prunus persica PRUPE_ppa010800mg I 0.715
PRUPE_ppa021197mg Prunus persica PRUPE_ppa021197mg I 0.715
Pm023769 Prunus mume Pm023769 I 0.715
Pm023775 Prunus mume Pm023775 I 0.715
30190.m011120 Ricinus communis 30190.m011120 I 0.714
cassava41192.m1 Manihot esculenta cassava41192.m1 I 0.712
SapurV1A.0045s0710 Salix purpurea SapurV1A.0045s0710 I 0.712
SapurV1A.0282s0080 Salix purpurea SapurV1A.0282s0080 I 0.712
PGSC0003DMG400014311 Solanum tuberosum PGSC0003DMG400014311 I 0.710
mgf019061m Mimulus guttatus mgf019061m I 0.710
DREB1A Arabidopsis thaliana AT4G25480 D 0.708
PRUPE_ppa010909mg Prunus persica PRUPE_ppa010909mg I 0.708
mgf017136m Mimulus guttatus mgf017136m I 0.708
MDP0000198054 Malus domestica MDP0000198054 I 0.706
CBF2 Arabidopsis lyrata fgenesh2_kg.7__1712__AT4G25470.1 I 0.705
SapurV1A.0068s0560 Salix purpurea SapurV1A.0068s0560 I 0.705
SapurV1A.0400s0160 Salix purpurea SapurV1A.0400s0160 I 0.704
VIT_02s0025g04460 Vitis vinifera VIT_02s0025g04460 I 0.702
Cucsa.166340 Cucumis sativus Cucsa.166340 I 0.702
Pm023772 Prunus mume Pm023772 I 0.700
30147.m014313 Ricinus communis 30147.m014313 I 0.700
GSMUA_Achr8G11980_001 Musa acuminata GSMUA_Achr8G11980_001 I 0.699
PGSC0003DMG400014309 Solanum tuberosum PGSC0003DMG400014309 I 0.699
PGSC0003DMG400014310 Solanum tuberosum PGSC0003DMG400014310 I 0.699
DREB1C Arabidopsis thaliana AT4G25470 D 0.698
GLYMA12G30740 Glycine max GLYMA12G30740 I 0.697
60638.m00016 Ricinus communis 60638.m00016 I 0.697
Bostr.7867s0359 Boechera stricta Bostr.7867s0359 I 0.697
Bostr.7867s0361 Boechera stricta Bostr.7867s0361 I 0.697
Cagra.28753s0001 Capsella grandiflora Cagra.28753s0001 I 0.697
Carubv10005709m.g Capsella rubella Carubv10005709m.g I 0.697
orange1.1g029015m.g Citrus sinensis orange1.1g029015m.g I 0.697
MTR_1g101600 Medicago truncatula MTR_1g101600 I 0.693
POPTR_0004s19820 Populus trichocarpa POPTR_0004s19820 I 0.692
VIT_16s0100g00380 Vitis vinifera VIT_16s0100g00380 I 0.691
Aquca_013_00436 Aquilegia coerulea Aquca_013_00436 I 0.691
PGSC0003DMG400012525 Solanum tuberosum PGSC0003DMG400012525 I 0.689
Ciclev10021923m.g Citrus clementina Ciclev10021923m.g I 0.688
LjSGA_037211.1 Lotus japonicus LjSGA_037211.1 I 0.688
BRADI3G51630 Brachypodium distachyon BRADI3G51630 I 0.686
MLOC_75886 Hordeum vulgare MLOC_75886 I 0.686
Solyc01g009440.1 Solanum lycopersicum Solyc01g009440.1 I 0.685
Ca_18948 Cicer arietinum Ca_18948 I 0.685
Bo01335s010 Brassica oleracea Bo01335s010 I 0.683
Bo8g108050 Brassica oleracea Bo8g108050 I 0.683
Bra016763 Brassica rapa Bra016763 I 0.683
Bra026963 Brassica rapa Bra026963 I 0.683
GLYMA13G39540 Glycine max GLYMA13G39540 I 0.682
Thhalv10009978m.g Eutrema salsugineum Thhalv10009978m.g I 0.682
chr3.LjT42M03.60.nd Lotus japonicus chr3.LjT42M03.60.nd I 0.682
Aquca_013_00435 Aquilegia coerulea Aquca_013_00435 I 0.681
DREB1F Arabidopsis thaliana AT1G12610 D 0.679
DREB1G Oryza indica BGIOSGA008804 I 0.679
DDF1 Arabidopsis lyrata fgenesh2_kg.1__1363__AT1G12610.1 D 0.679
GRMZM2G137341 Zea mays GRMZM2G137341 I 0.679
LPERR02G22610 Leersia perrieri LPERR02G22610 I 0.679
OBART02G27760 Oryza barthii OBART02G27760 I 0.679
OGLUM02G28340 Oryza glumaepatula OGLUM02G28340 I 0.679
OMERI02G26980 Oryza meridionalis OMERI02G26980 I 0.679
ONIVA02G30790 Oryza nivara ONIVA02G30790 I 0.679
OPUNC02G25480 Oryza punctata OPUNC02G25480 I 0.679
ORUFI02G29230 Oryza rufipogon ORUFI02G29230 I 0.679
DREB1G Oryza sativa OS02G0677300 D 0.679
Sb04g031950 Sorghum bicolor Sb04g031950 I 0.679
Pavir.Aa00912 Panicum virgatum Pavir.Aa00912 I 0.679
Pavir.Ab02685 Panicum virgatum Pavir.Ab02685 I 0.679
Gorai.006G046200 Gossypium raimondii Gorai.006G046200 I 0.678