MTR_8g006410 (Medicago truncatula)
AP2

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00847 (AP2) IPR001471 MTR_8g006410 T002948_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
TINY
M01094_2.00 		Arabidopsis thaliana
NHRCCGACAN
NTGTCGGYDN		 PBM
Lambert et al.(2019)
pTH11541 		0.749 0.840
TINY
M06669_2.00 		Arabidopsis thaliana
HNYCRCCGACANHDN
NHDNTGTCGGYGRND		 Dap-seq
OMalley et al.(2016)
TINY_col_a 		0.749 0.840
DREB1D
M06678_2.00 		Arabidopsis thaliana
NHBRCCGACRTNN
NNAYGTCGGYVDN		 Dap-seq
OMalley et al.(2016)
CBF4_col_a 		0.732 0.800
DREB1D
M06679_2.00 		Arabidopsis thaliana
HYRCCGACATND
HNATGTCGGYRD		 Dap-seq
OMalley et al.(2016)
CBF4_colamp_a 		0.732 0.800
DREB1A
M01624_2.00 		Arabidopsis thaliana
NRCCGACNNN
NNNGTCGGYN		 PBM
Weirauch et al.(2014)
pTH8163 		0.707 0.760
DREB1A
M01625_2.00 		Arabidopsis thaliana
NNRCCGACNW
WNGTCGGYNN		 PBM
Weirauch et al.(2014)
pTH9718 		0.707 0.760
DREB1A
M06641_2.00 		Arabidopsis thaliana
HNYBRCCGACDWNN
NNWHGTCGGYVRND		 Dap-seq
OMalley et al.(2016)
CBF3_col_a 		0.707 0.760
DREB1A
M06642_2.00 		Arabidopsis thaliana
YBRCCGACATN
NATGTCGGYVR		 Dap-seq
OMalley et al.(2016)
CBF3_colamp_a 		0.707 0.760
DREB1C
M01623_2.00 		Arabidopsis thaliana
RCCGACAT
ATGTCGGY		 PBM
Weirauch et al.(2014)
pTH8187 		0.693 0.740
DREB1C
M06639_2.00 		Arabidopsis thaliana
NNNHBRCCGACATNN
NNATGTCGGYVDNNN		 Dap-seq
OMalley et al.(2016)
CBF2_col_a 		0.693 0.740
DREB1C
M06640_2.00 		Arabidopsis thaliana
NYBRCCGACATVN
NBATGTCGGYVRN		 Dap-seq
OMalley et al.(2016)
CBF2_colamp_a 		0.693 0.740
ERF034
M06614_2.00 		Arabidopsis thaliana
NHNYCACCGACANHD
HDNTGTCGGTGRNDN		 Dap-seq
OMalley et al.(2016)
At2g44940_col_a 		0.686 0.880
ERF034
M06615_2.00 		Arabidopsis thaliana
NDBCACCGACANH
DNTGTCGGTGVHN		 Dap-seq
OMalley et al.(2016)
At2g44940_colamp_a 		0.686 0.880
For this family, TFs with SR scores > 0.677 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
AET01204 AP2 50 101

Links

Other AP2 family TFs
Other Medicago truncatula TFs

252 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
mgf026339m Mimulus guttatus mgf026339m I 0.864
Ca_18948 Cicer arietinum Ca_18948 I 0.841
chr3.LjT42M03.60.nd Lotus japonicus chr3.LjT42M03.60.nd I 0.833
POPTR_0014s05500 Populus trichocarpa POPTR_0014s05500 I 0.778
SapurV1A.0490s0260 Salix purpurea SapurV1A.0490s0260 I 0.778
PGSC0003DMG400026035 Solanum tuberosum PGSC0003DMG400026035 I 0.772
Solyc01g090560.2 Solanum lycopersicum Solyc01g090560.2 I 0.772
PGSC0003DMG400012087 Solanum tuberosum PGSC0003DMG400012087 I 0.766
Cla021417 Citrullus lanatus Cla021417 I 0.766
POPTR_0001s08710 Populus trichocarpa POPTR_0001s08710 I 0.760
GLYMA03G27050 Glycine max GLYMA03G27050 I 0.756
GLYMA07G14560 Glycine max GLYMA07G14560 I 0.756
Cucsa.259750 Cucumis sativus Cucsa.259750 I 0.755
Solyc03g026270.1 Solanum lycopersicum Solyc03g026270.1 I 0.751
TINY Arabidopsis thaliana AT5G25810 D 0.749
Bo7g095710 Brassica oleracea Bo7g095710 I 0.749
Bra009862 Brassica rapa Bra009862 I 0.749
Solyc03g026280.2 Solanum lycopersicum Solyc03g026280.2 I 0.749
Carubv10002601m.g Capsella rubella Carubv10002601m.g I 0.749
POPTR_0001s08720 Populus trichocarpa POPTR_0001s08720 I 0.748
SapurV1A.0282s0070 Salix purpurea SapurV1A.0282s0070 I 0.748
VIT_15s0021g02110 Vitis vinifera VIT_15s0021g02110 I 0.747
Eucgr.E01593 Eucalyptus grandis Eucgr.E01593 I 0.747
Solyc03g124110.1 Solanum lycopersicum Solyc03g124110.1 I 0.746
Bostr.29827s0238 Boechera stricta Bostr.29827s0238 I 0.746
MTR_6g465510 Medicago truncatula MTR_6g465510 I 0.744
VIT_00s0341g00070 Vitis vinifera VIT_00s0341g00070 I 0.744
VIT_00s0632g00010 Vitis vinifera VIT_00s0632g00010 I 0.744
POPTR_0012s13870 Populus trichocarpa POPTR_0012s13870 I 0.742
cassava35062.m1 Manihot esculenta cassava35062.m1 I 0.742
Gorai.007G010100 Gossypium raimondii Gorai.007G010100 I 0.742
MTR_6g465690 Medicago truncatula MTR_6g465690 I 0.740
MTR_6g466000 Medicago truncatula MTR_6g466000 I 0.740
MDP0000790788 Malus domestica MDP0000790788 I 0.740
SapurV1A.0045s0710 Salix purpurea SapurV1A.0045s0710 I 0.739
SapurV1A.0282s0080 Salix purpurea SapurV1A.0282s0080 I 0.739
MTR_8g013860 Medicago truncatula MTR_8g013860 I 0.738
cassava41192.m1 Manihot esculenta cassava41192.m1 I 0.738
Eucgr.E00529 Eucalyptus grandis Eucgr.E00529 I 0.738
POPTR_0015s13830 Populus trichocarpa POPTR_0015s13830 I 0.736
Cucsa.251030 Cucumis sativus Cucsa.251030 I 0.736
mgf026642m Mimulus guttatus mgf026642m I 0.736
Cagra.2248s0026 Capsella grandiflora Cagra.2248s0026 I 0.736
cassava18935.valid.m1 Manihot esculenta cassava18935.valid.m1 I 0.735
VIT_02s0025g04460 Vitis vinifera VIT_02s0025g04460 I 0.733
DREB1D Arabidopsis thaliana AT5G51990 D 0.732
Bo6g077080 Brassica oleracea Bo6g077080 I 0.732
Bo9g104770 Brassica oleracea Bo9g104770 I 0.732
Bra003415 Brassica rapa Bra003415 I 0.732
Bra028290 Brassica rapa Bra028290 I 0.732
CBF4 Arabidopsis lyrata scaffold_801637.1 I 0.732
VIT_00s0341g00080 Vitis vinifera VIT_00s0341g00080 I 0.732
Cla006315 Citrullus lanatus Cla006315 I 0.732
Bostr.15774s0346 Boechera stricta Bostr.15774s0346 I 0.732
Bostr.7867s0360 Boechera stricta Bostr.7867s0360 I 0.732
Cagra.0094s0011 Capsella grandiflora Cagra.0094s0011 I 0.732
Carubv10027759m.g Capsella rubella Carubv10027759m.g I 0.732
Thhalv10015252m.g Eutrema salsugineum Thhalv10015252m.g I 0.732
Thhalv10027405m.g Eutrema salsugineum Thhalv10027405m.g I 0.732
MTR_6g465420 Medicago truncatula MTR_6g465420 I 0.731
MTR_6g465430 Medicago truncatula MTR_6g465430 I 0.731
Eucgr.D01925 Eucalyptus grandis Eucgr.D01925 I 0.731
MTR_6g465460 Medicago truncatula MTR_6g465460 I 0.729
gene13329-v1.0-hybrid Fragaria vesca gene13329-v1.0-hybrid I 0.729
PK23332.1 Cannabis sativa PK23332.1 I 0.729
GLYMA12G30740 Glycine max GLYMA12G30740 I 0.726
MTR_6g465450 Medicago truncatula MTR_6g465450 I 0.726
MTR_6g466130 Medicago truncatula MTR_6g466130 I 0.725
Lus10001871.g Linum usitatissimum Lus10001871.g I 0.725
Lus10006332.g Linum usitatissimum Lus10006332.g I 0.725
Lus10006334.g Linum usitatissimum Lus10006334.g I 0.725
Lus10029601.g Linum usitatissimum Lus10029601.g I 0.725
Lus10029602.g Linum usitatissimum Lus10029602.g I 0.725
GLYMA07G02001 Glycine max GLYMA07G02001 I 0.724
GLYMA08G21650 Glycine max GLYMA08G21650 I 0.724
GLYMA14G22740 Glycine max GLYMA14G22740 I 0.723
PRUPE_ppa009533mg Prunus persica PRUPE_ppa009533mg I 0.723
TCM_037194 Theobroma cacao TCM_037194 I 0.723
VIT_04s0008g03400 Vitis vinifera VIT_04s0008g03400 I 0.723
Pm005151 Prunus mume Pm005151 I 0.723
29794.m003381 Ricinus communis 29794.m003381 I 0.723
cassava17185.m1 Manihot esculenta cassava17185.m1 I 0.723
cassava18256.valid.m1 Manihot esculenta cassava18256.valid.m1 I 0.723
Ciclev10009370m.g Citrus clementina Ciclev10009370m.g I 0.723
gene08838-v1.0-hybrid Fragaria vesca gene08838-v1.0-hybrid I 0.723
MDP0000241650 Malus domestica MDP0000241650 I 0.723
MDP0000242611 Malus domestica MDP0000242611 I 0.723
orange1.1g027107m.g Citrus sinensis orange1.1g027107m.g I 0.723
SapurV1A.0291s0070 Salix purpurea SapurV1A.0291s0070 I 0.723
PK28082.1 Cannabis sativa PK28082.1 I 0.723
PGSC0003DMG400007025 Solanum tuberosum PGSC0003DMG400007025 I 0.722
Solyc05g050830.1 Solanum lycopersicum Solyc05g050830.1 I 0.722
evm.TU.supercontig_74.84 Carica papaya evm.TU.supercontig_74.84 I 0.722
GLYMA17G27520 Glycine max GLYMA17G27520 I 0.721
GSMUA_Achr11G21630_001 Musa acuminata GSMUA_Achr11G21630_001 I 0.721
MTR_3g110205 Medicago truncatula MTR_3g110205 I 0.721
Eucgr.C00546 Eucalyptus grandis Eucgr.C00546 I 0.721
Thhalv10015895m.g Eutrema salsugineum Thhalv10015895m.g I 0.721
AMTR_s00056p00064760 Amborella trichopoda AMTR_s00056p00064760 I 0.720
AMTR_s00111p00051610 Amborella trichopoda AMTR_s00111p00051610 I 0.720
DREB3 Arabidopsis thaliana AT5G11590 I 0.720
Bo9g170060 Brassica oleracea Bo9g170060 I 0.720
Bra008952 Brassica rapa Bra008952 I 0.720
TINY2 Arabidopsis lyrata fgenesh2_kg.6__1130__AT5G11590.1 I 0.720
Bostr.20055s0079 Boechera stricta Bostr.20055s0079 I 0.720
Carubv10003136m.g Capsella rubella Carubv10003136m.g I 0.720
Gorai.010G106600 Gossypium raimondii Gorai.010G106600 I 0.720
SapurV1A.0068s0560 Salix purpurea SapurV1A.0068s0560 I 0.720
SapurV1A.0400s0160 Salix purpurea SapurV1A.0400s0160 I 0.720
Cla002362 Citrullus lanatus Cla002362 I 0.719
gene32378-v1.0-hybrid Fragaria vesca gene32378-v1.0-hybrid I 0.719
GLYMA06G08990 Glycine max GLYMA06G08990 I 0.718
MTR_6g465530 Medicago truncatula MTR_6g465530 I 0.718
POPTR_0004s19820 Populus trichocarpa POPTR_0004s19820 I 0.718
MDP0000198054 Malus domestica MDP0000198054 I 0.718
GLYMA04G08901 Glycine max GLYMA04G08901 I 0.717
PRUPE_ppa010935mg Prunus persica PRUPE_ppa010935mg I 0.717
MDP0000154764 Malus domestica MDP0000154764 I 0.717
GLYMA09G27180 Glycine max GLYMA09G27180 I 0.716
PRUPE_ppa010800mg Prunus persica PRUPE_ppa010800mg I 0.716
Pm023775 Prunus mume Pm023775 I 0.716
30147.m014313 Ricinus communis 30147.m014313 I 0.716
PGSC0003DMG400014309 Solanum tuberosum PGSC0003DMG400014309 I 0.715
TCM_016175 Theobroma cacao TCM_016175 I 0.714
Eucgr.C02928 Eucalyptus grandis Eucgr.C02928 I 0.714
PGSC0003DMG400014310 Solanum tuberosum PGSC0003DMG400014310 I 0.712
60638.m00016 Ricinus communis 60638.m00016 I 0.712
GLYMA13G39540 Glycine max GLYMA13G39540 I 0.711
Cla011674 Citrullus lanatus Cla011674 I 0.711
Bo2g010530 Brassica oleracea Bo2g010530 I 0.710
Bo8g095240 Brassica oleracea Bo8g095240 I 0.710
Bra007539 Brassica rapa Bra007539 I 0.710
mgf024703m Mimulus guttatus mgf024703m I 0.710
Gorai.008G243600 Gossypium raimondii Gorai.008G243600 I 0.710
Thhalv10006200m.g Eutrema salsugineum Thhalv10006200m.g I 0.710
Ca_14911 Cicer arietinum Ca_14911 I 0.709
Cla022553 Citrullus lanatus Cla022553 I 0.709
Bra023332 Brassica rapa Bra023332 I 0.708
PGSC0003DMG400004255 Solanum tuberosum PGSC0003DMG400004255 I 0.708
PGSC0003DMG400014311 Solanum tuberosum PGSC0003DMG400014311 I 0.708
30190.m011120 Ricinus communis 30190.m011120 I 0.708
DREB1A Arabidopsis thaliana AT4G25480 D 0.707
MTR_1g006660 Medicago truncatula MTR_1g006660 I 0.707
VIT_16s0100g00380 Vitis vinifera VIT_16s0100g00380 I 0.707
Cucsa.302750 Cucumis sativus Cucsa.302750 I 0.707
PRUPE_ppa010909mg Prunus persica PRUPE_ppa010909mg I 0.706
Cucsa.161310 Cucumis sativus Cucsa.161310 I 0.706
Bostr.7867s0359 Boechera stricta Bostr.7867s0359 I 0.706
Bostr.7867s0361 Boechera stricta Bostr.7867s0361 I 0.706
Cagra.28753s0001 Capsella grandiflora Cagra.28753s0001 I 0.706
Carubv10005709m.g Capsella rubella Carubv10005709m.g I 0.706
PGSC0003DMG400002235 Solanum tuberosum PGSC0003DMG400002235 I 0.705
Solyc08g066660.1 Solanum lycopersicum Solyc08g066660.1 I 0.705
Gorai.004G289800 Gossypium raimondii Gorai.004G289800 I 0.705
GSMUA_Achr10G27680_001 Musa acuminata GSMUA_Achr10G27680_001 I 0.704
PRUPE_ppa021197mg Prunus persica PRUPE_ppa021197mg I 0.701
Pm023769 Prunus mume Pm023769 I 0.701
mgf017136m Mimulus guttatus mgf017136m I 0.701
CBF2 Arabidopsis lyrata fgenesh2_kg.7__1712__AT4G25470.1 I 0.700
orange1.1g029015m.g Citrus sinensis orange1.1g029015m.g I 0.700
Cucsa.166340 Cucumis sativus Cucsa.166340 I 0.698
Ca_01908 Cicer arietinum Ca_01908 I 0.697
Ca_28185 Cicer arietinum Ca_28185 I 0.697
evm.TU.supercontig_7.269 Carica papaya evm.TU.supercontig_7.269 I 0.697
gene25758-v1.0-hybrid Fragaria vesca gene25758-v1.0-hybrid I 0.697
chr1.LjT23O20.60.nd Lotus japonicus chr1.LjT23O20.60.nd I 0.697
POPTR_0009s14990 Populus trichocarpa POPTR_0009s14990 I 0.696
VIT_11s0016g02140 Vitis vinifera VIT_11s0016g02140 I 0.696
30190.m011119 Ricinus communis 30190.m011119 I 0.696
SapurV1A.0219s0320 Salix purpurea SapurV1A.0219s0320 I 0.696
BGIOSGA016882 Oryza indica BGIOSGA016882 I 0.695
OGLUM02G27010 Oryza glumaepatula OGLUM02G27010 I 0.695
OGLUM04G20750 Oryza glumaepatula OGLUM04G20750 I 0.695
OMERI02G25900 Oryza meridionalis OMERI02G25900 I 0.695
OMERI04G17260 Oryza meridionalis OMERI04G17260 I 0.695
ONIVA02G28960 Oryza nivara ONIVA02G28960 I 0.695
ONIVA04G19040 Oryza nivara ONIVA04G19040 I 0.695
OPUNC02G24210 Oryza punctata OPUNC02G24210 I 0.695
OPUNC04G18500 Oryza punctata OPUNC04G18500 I 0.695
ORGLA02G0228000 Oryza glaberrima ORGLA02G0228000 I 0.695
ORGLA04G0178600 Oryza glaberrima ORGLA04G0178600 I 0.695
ORUFI04G22400 Oryza rufipogon ORUFI04G22400 I 0.695
OS02G0656600 Oryza sativa OS02G0656600 I 0.695
OS04G0549700 Oryza sativa OS04G0549700 I 0.695
Sb06g024530 Sorghum bicolor Sb06g024530 I 0.695
Si010703m.g Setaria italica Si010703m.g I 0.695
Traes_2AL_45E6314EF Triticum aestivum Traes_2AL_45E6314EF I 0.695
Traes_2BL_593E1CCC2 Triticum aestivum Traes_2BL_593E1CCC2 I 0.695
Carubv10006965m.g Capsella rubella Carubv10006965m.g I 0.695
MDP0000174352 Malus domestica MDP0000174352 I 0.695
Pavir.Ga01095 Panicum virgatum Pavir.Ga01095 I 0.695
Pavir.J17742 Panicum virgatum Pavir.J17742 I 0.695
GSMUA_Achr10G21470_001 Musa acuminata GSMUA_Achr10G21470_001 I 0.694
Pm023772 Prunus mume Pm023772 I 0.694
DREB1C Arabidopsis thaliana AT4G25470 D 0.693
BRADI3G50620 Brachypodium distachyon BRADI3G50620 I 0.693
Aquca_012_00144 Aquilegia coerulea Aquca_012_00144 I 0.692
GSMUA_Achr8G11980_001 Musa acuminata GSMUA_Achr8G11980_001 I 0.691
MTR_1g101600 Medicago truncatula MTR_1g101600 I 0.691
MTR_6g465850 Medicago truncatula MTR_6g465850 I 0.691
LjT33K05.60.nd Lotus japonicus LjT33K05.60.nd I 0.691
evm.TU.supercontig_5.66 Carica papaya evm.TU.supercontig_5.66 I 0.690
Gorai.006G046200 Gossypium raimondii Gorai.006G046200 I 0.690
Bo9g011210 Brassica oleracea Bo9g011210 I 0.689
Bra036552 Brassica rapa Bra036552 I 0.689
MTR_2g085015 Medicago truncatula MTR_2g085015 I 0.689
30174.m008790 Ricinus communis 30174.m008790 I 0.689
Thhalv10004870m.g Eutrema salsugineum Thhalv10004870m.g I 0.689
GLYMA15G02130 Glycine max GLYMA15G02130 I 0.688
GSMUA_Achr7G09450_001 Musa acuminata GSMUA_Achr7G09450_001 I 0.688
TCM_005639 Theobroma cacao TCM_005639 I 0.688
SapurV1A.0033s0230 Salix purpurea SapurV1A.0033s0230 I 0.687
ERF034 Arabidopsis thaliana AT2G44940 D 0.686
fgenesh2_kg.4__2683__AT2G44940.1 Arabidopsis lyrata fgenesh2_kg.4__2683__AT2G44940.1 I 0.686
POPTR_0002s14210 Populus trichocarpa POPTR_0002s14210 I 0.686
PRUPE_ppa009812mg Prunus persica PRUPE_ppa009812mg I 0.686
Pm017610 Prunus mume Pm017610 I 0.686
cassava17064.m1 Manihot esculenta cassava17064.m1 I 0.686
Bostr.25993s0277 Boechera stricta Bostr.25993s0277 I 0.686
Cagra.0239s0048 Capsella grandiflora Cagra.0239s0048 I 0.686
Carubv10023699m.g Capsella rubella Carubv10023699m.g I 0.686
Thhalv10001792m.g Eutrema salsugineum Thhalv10001792m.g I 0.686
GLYMA13G43210 Glycine max GLYMA13G43210 I 0.685
MLOC_75601 Hordeum vulgare MLOC_75601 I 0.685
PGSC0003DMG400012525 Solanum tuberosum PGSC0003DMG400012525 I 0.685
Solyc01g009440.1 Solanum lycopersicum Solyc01g009440.1 I 0.685
Traes_6DL_901793D6D Triticum aestivum Traes_6DL_901793D6D I 0.685
Aquca_013_00435 Aquilegia coerulea Aquca_013_00435 I 0.685
Lus10038270.g Linum usitatissimum Lus10038270.g I 0.685
Aquca_011_00566 Aquilegia coerulea Aquca_011_00566 I 0.684
mgf019061m Mimulus guttatus mgf019061m I 0.683
Aquca_013_00436 Aquilegia coerulea Aquca_013_00436 I 0.683
Gorai.004G165300 Gossypium raimondii Gorai.004G165300 I 0.683
GLYMA10G38440 Glycine max GLYMA10G38440 I 0.682
GSMUA_Achr1G01620_001 Musa acuminata GSMUA_Achr1G01620_001 I 0.682
Eucgr.A02818 Eucalyptus grandis Eucgr.A02818 I 0.682
BRADI3G51630 Brachypodium distachyon BRADI3G51630 I 0.681
MLOC_75886 Hordeum vulgare MLOC_75886 I 0.681
Lus10025834.g Linum usitatissimum Lus10025834.g I 0.681
Bo01335s010 Brassica oleracea Bo01335s010 I 0.680
Bo4g024220 Brassica oleracea Bo4g024220 I 0.680
Bo4g195280 Brassica oleracea Bo4g195280 I 0.680
Bra004878 Brassica rapa Bra004878 I 0.680
Bra016763 Brassica rapa Bra016763 I 0.680
Bra040333 Brassica rapa Bra040333 I 0.680
ORUFI10G19670 Oryza rufipogon ORUFI10G19670 I 0.680
Lus10027412.g Linum usitatissimum Lus10027412.g I 0.678
Lus10031657.g Linum usitatissimum Lus10031657.g I 0.678
TCM_014892 Theobroma cacao TCM_014892 I 0.677
cassava19875.m1 Manihot esculenta cassava19875.m1 I 0.677
cassava19912.m1 Manihot esculenta cassava19912.m1 I 0.677
Ciclev10021923m.g Citrus clementina Ciclev10021923m.g I 0.677