LjT33K05.60.nd (Lotus japonicus)
AP2

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00847 (AP2) IPR001471 LjT33K05.60.nd T010326_2.00 Superfamily (2010-Oct-26)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
TINY
M01094_2.00 		Arabidopsis thaliana
NHRCCGACAN
NTGTCGGYDN		 PBM
Lambert et al.(2019)
pTH11541 		0.717 0.820
TINY
M06669_2.00 		Arabidopsis thaliana
HNYCRCCGACANHDN
NHDNTGTCGGYGRND		 Dap-seq
OMalley et al.(2016)
TINY_col_a 		0.717 0.820
For this family, TFs with SR scores > 0.677 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
LjT33K05.60.nd AP2 24 75

Links

Other AP2 family TFs
Other Lotus japonicus TFs

109 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
cassava33300.m1 Manihot esculenta cassava33300.m1 I 0.773
Cucsa.259750 Cucumis sativus Cucsa.259750 I 0.743
Cla021417 Citrullus lanatus Cla021417 I 0.742
PGSC0003DMG400026035 Solanum tuberosum PGSC0003DMG400026035 I 0.723
Solyc01g090560.2 Solanum lycopersicum Solyc01g090560.2 I 0.723
LjT33K05.50.nd Lotus japonicus LjT33K05.50.nd I 0.722
Bostr.29827s0238 Boechera stricta Bostr.29827s0238 I 0.718
TINY Arabidopsis thaliana AT5G25810 D 0.717
Bo7g095710 Brassica oleracea Bo7g095710 I 0.717
Bra009862 Brassica rapa Bra009862 I 0.717
Carubv10002601m.g Capsella rubella Carubv10002601m.g I 0.717
Bo6g077080 Brassica oleracea Bo6g077080 I 0.716
Bo8g095240 Brassica oleracea Bo8g095240 I 0.716
Bra003415 Brassica rapa Bra003415 I 0.716
Bra007539 Brassica rapa Bra007539 I 0.716
Thhalv10006200m.g Eutrema salsugineum Thhalv10006200m.g I 0.716
PGSC0003DMG400007025 Solanum tuberosum PGSC0003DMG400007025 I 0.709
Solyc05g050830.1 Solanum lycopersicum Solyc05g050830.1 I 0.709
GSMUA_Achr10G27680_001 Musa acuminata GSMUA_Achr10G27680_001 I 0.708
PGSC0003DMG400012087 Solanum tuberosum PGSC0003DMG400012087 I 0.707
Lus10004738.g Linum usitatissimum Lus10004738.g I 0.707
Lus10007799.g Linum usitatissimum Lus10007799.g I 0.707
MDP0000790788 Malus domestica MDP0000790788 I 0.704
BRADI3G50620 Brachypodium distachyon BRADI3G50620 I 0.700
BGIOSGA016882 Oryza indica BGIOSGA016882 I 0.699
OGLUM02G27010 Oryza glumaepatula OGLUM02G27010 I 0.699
OGLUM04G20750 Oryza glumaepatula OGLUM04G20750 I 0.699
OMERI02G25900 Oryza meridionalis OMERI02G25900 I 0.699
OMERI04G17260 Oryza meridionalis OMERI04G17260 I 0.699
ONIVA02G28960 Oryza nivara ONIVA02G28960 I 0.699
ONIVA04G19040 Oryza nivara ONIVA04G19040 I 0.699
OPUNC02G24210 Oryza punctata OPUNC02G24210 I 0.699
OPUNC04G18500 Oryza punctata OPUNC04G18500 I 0.699
ORGLA02G0228000 Oryza glaberrima ORGLA02G0228000 I 0.699
ORGLA04G0178600 Oryza glaberrima ORGLA04G0178600 I 0.699
ORUFI04G22400 Oryza rufipogon ORUFI04G22400 I 0.699
OS02G0656600 Oryza sativa OS02G0656600 I 0.699
OS04G0549700 Oryza sativa OS04G0549700 I 0.699
Sb06g024530 Sorghum bicolor Sb06g024530 I 0.699
Si010703m.g Setaria italica Si010703m.g I 0.699
Traes_2AL_45E6314EF Triticum aestivum Traes_2AL_45E6314EF I 0.699
Traes_2BL_593E1CCC2 Triticum aestivum Traes_2BL_593E1CCC2 I 0.699
Pavir.Ga01095 Panicum virgatum Pavir.Ga01095 I 0.699
Pavir.J17742 Panicum virgatum Pavir.J17742 I 0.699
VIT_15s0021g02110 Vitis vinifera VIT_15s0021g02110 I 0.698
Eucgr.E01593 Eucalyptus grandis Eucgr.E01593 I 0.698
AMTR_s00056p00064760 Amborella trichopoda AMTR_s00056p00064760 I 0.697
GLYMA03G27050 Glycine max GLYMA03G27050 I 0.697
GLYMA04G08901 Glycine max GLYMA04G08901 I 0.697
GLYMA07G14560 Glycine max GLYMA07G14560 I 0.697
Cla015715 Citrullus lanatus Cla015715 I 0.696
mgf026339m Mimulus guttatus mgf026339m I 0.694
Bo9g011210 Brassica oleracea Bo9g011210 I 0.693
Bra036552 Brassica rapa Bra036552 I 0.693
MTR_8g013860 Medicago truncatula MTR_8g013860 I 0.693
28353.m000054 Ricinus communis 28353.m000054 I 0.693
evm.TU.supercontig_101.39 Carica papaya evm.TU.supercontig_101.39 I 0.693
Thhalv10004870m.g Eutrema salsugineum Thhalv10004870m.g I 0.693
Bo3g028500 Brassica oleracea Bo3g028500 I 0.691
Bra023026 Brassica rapa Bra023026 I 0.691
MTR_1g006660 Medicago truncatula MTR_1g006660 I 0.691
MTR_8g006410 Medicago truncatula MTR_8g006410 I 0.691
GLYMA07G02001 Glycine max GLYMA07G02001 I 0.690
GLYMA08G21650 Glycine max GLYMA08G21650 I 0.690
Ca_14911 Cicer arietinum Ca_14911 I 0.690
PK25970.1 Cannabis sativa PK25970.1 I 0.690
DREB3 Arabidopsis thaliana AT5G11590 I 0.689
Bo9g170060 Brassica oleracea Bo9g170060 I 0.689
Bra008952 Brassica rapa Bra008952 I 0.689
TINY2 Arabidopsis lyrata fgenesh2_kg.6__1130__AT5G11590.1 I 0.689
GLYMA06G08990 Glycine max GLYMA06G08990 I 0.689
MLOC_75601 Hordeum vulgare MLOC_75601 I 0.689
MTR_3g110205 Medicago truncatula MTR_3g110205 I 0.689
Traes_6DL_901793D6D Triticum aestivum Traes_6DL_901793D6D I 0.689
Bostr.20055s0079 Boechera stricta Bostr.20055s0079 I 0.689
Carubv10003136m.g Capsella rubella Carubv10003136m.g I 0.689
Eucgr.C00546 Eucalyptus grandis Eucgr.C00546 I 0.689
Thhalv10015895m.g Eutrema salsugineum Thhalv10015895m.g I 0.689
VIT_00s0341g00070 Vitis vinifera VIT_00s0341g00070 I 0.688
VIT_00s0632g00010 Vitis vinifera VIT_00s0632g00010 I 0.688
GLYMA14G22740 Glycine max GLYMA14G22740 I 0.687
PRUPE_ppa009533mg Prunus persica PRUPE_ppa009533mg I 0.687
TCM_037194 Theobroma cacao TCM_037194 I 0.687
VIT_04s0008g03400 Vitis vinifera VIT_04s0008g03400 I 0.687
Pm005151 Prunus mume Pm005151 I 0.687
29794.m003381 Ricinus communis 29794.m003381 I 0.687
cassava17185.m1 Manihot esculenta cassava17185.m1 I 0.687
cassava18256.valid.m1 Manihot esculenta cassava18256.valid.m1 I 0.687
Ciclev10009370m.g Citrus clementina Ciclev10009370m.g I 0.687
evm.TU.supercontig_89.73 Carica papaya evm.TU.supercontig_89.73 I 0.687
gene08838-v1.0-hybrid Fragaria vesca gene08838-v1.0-hybrid I 0.687
Gorai.003G175100 Gossypium raimondii Gorai.003G175100 I 0.687
Gorai.010G106600 Gossypium raimondii Gorai.010G106600 I 0.687
MDP0000241650 Malus domestica MDP0000241650 I 0.687
MDP0000242611 Malus domestica MDP0000242611 I 0.687
orange1.1g027107m.g Citrus sinensis orange1.1g027107m.g I 0.687
SapurV1A.0291s0070 Salix purpurea SapurV1A.0291s0070 I 0.687
PK28082.1 Cannabis sativa PK28082.1 I 0.687
AMTR_s00111p00051610 Amborella trichopoda AMTR_s00111p00051610 I 0.685
GLYMA17G27520 Glycine max GLYMA17G27520 I 0.685
Lus10038270.g Linum usitatissimum Lus10038270.g I 0.684
Gorai.004G165300 Gossypium raimondii Gorai.004G165300 I 0.682
Ca_12765 Cicer arietinum Ca_12765 I 0.681
Eucgr.C02928 Eucalyptus grandis Eucgr.C02928 I 0.681
Lus10025834.g Linum usitatissimum Lus10025834.g I 0.681
mgf024703m Mimulus guttatus mgf024703m I 0.679
GSMUA_Achr1G04350_001 Musa acuminata GSMUA_Achr1G04350_001 I 0.678
SapurV1A.0805s0100 Salix purpurea SapurV1A.0805s0100 I 0.678
TCM_015930 Theobroma cacao TCM_015930 I 0.677