PGSC0003DMG400012087 (Solanum tuberosum)
AP2

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00847 (AP2) IPR001471 PGSC0003DMG400012087 T004385_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
TINY
M01094_2.00 		Arabidopsis thaliana
NHRCCGACAN
NTGTCGGYDN		 PBM
Lambert et al.(2019)
pTH11541 		0.764 0.880
TINY
M06669_2.00 		Arabidopsis thaliana
HNYCRCCGACANHDN
NHDNTGTCGGYGRND		 Dap-seq
OMalley et al.(2016)
TINY_col_a 		0.764 0.880
ERF034
M06614_2.00 		Arabidopsis thaliana
NHNYCACCGACANHD
HDNTGTCGGTGRNDN		 Dap-seq
OMalley et al.(2016)
At2g44940_col_a 		0.701 0.920
ERF034
M06615_2.00 		Arabidopsis thaliana
NDBCACCGACANH
DNTGTCGGTGVHN		 Dap-seq
OMalley et al.(2016)
At2g44940_colamp_a 		0.701 0.920
Q5MAR7_BRANA
M09742_2.00 		Brassica napus Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$DREBIII1_01 		0.691 0.880
Q3HS44_BRANA
M09741_2.00 		Brassica napus Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$DREBIII2_01 		0.691 0.880
Q3HS43_BRANA
M09740_2.00 		Brassica napus Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$DREBIII3_01 		0.691 0.880
ERF035
M06631_2.00 		Arabidopsis thaliana
YCACCGACANWDNH
DNHWNTGTCGGTGR		 Dap-seq
OMalley et al.(2016)
AT3G60490_col_a 		0.689 0.880
ERF035
M06632_2.00 		Arabidopsis thaliana
NNBCACCGACAHWNNN
NNNWDTGTCGGTGVNN		 Dap-seq
OMalley et al.(2016)
AT3G60490_colamp_a 		0.689 0.880
For this family, TFs with SR scores > 0.677 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
PGSC0003DMT400031522 AP2 67 118

Links

Other AP2 family TFs
Other Solanum tuberosum TFs

237 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
PGSC0003DMG400026035 Solanum tuberosum PGSC0003DMG400026035 I 0.787
Solyc01g090560.2 Solanum lycopersicum Solyc01g090560.2 I 0.787
MDP0000790788 Malus domestica MDP0000790788 I 0.785
MTR_8g013860 Medicago truncatula MTR_8g013860 I 0.783
Cla021417 Citrullus lanatus Cla021417 I 0.781
VIT_00s0341g00080 Vitis vinifera VIT_00s0341g00080 I 0.780
GLYMA08G21650 Glycine max GLYMA08G21650 I 0.772
GLYMA03G27050 Glycine max GLYMA03G27050 I 0.771
GLYMA07G14560 Glycine max GLYMA07G14560 I 0.771
Cucsa.259750 Cucumis sativus Cucsa.259750 I 0.770
GLYMA07G02001 Glycine max GLYMA07G02001 I 0.769
MTR_8g006410 Medicago truncatula MTR_8g006410 I 0.766
TINY Arabidopsis thaliana AT5G25810 D 0.764
Bo7g095710 Brassica oleracea Bo7g095710 I 0.764
Bra009862 Brassica rapa Bra009862 I 0.764
Carubv10002601m.g Capsella rubella Carubv10002601m.g I 0.764
VIT_15s0021g02110 Vitis vinifera VIT_15s0021g02110 I 0.762
Eucgr.E01593 Eucalyptus grandis Eucgr.E01593 I 0.762
Bostr.29827s0238 Boechera stricta Bostr.29827s0238 I 0.761
GSMUA_Achr7G09450_001 Musa acuminata GSMUA_Achr7G09450_001 I 0.759
VIT_00s0341g00070 Vitis vinifera VIT_00s0341g00070 I 0.759
VIT_00s0632g00010 Vitis vinifera VIT_00s0632g00010 I 0.759
Bo6g077080 Brassica oleracea Bo6g077080 I 0.748
Bra003415 Brassica rapa Bra003415 I 0.748
chr1.LjT23O20.60.nd Lotus japonicus chr1.LjT23O20.60.nd I 0.745
GSMUA_Achr10G21470_001 Musa acuminata GSMUA_Achr10G21470_001 I 0.742
Ca_01908 Cicer arietinum Ca_01908 I 0.742
Ca_28185 Cicer arietinum Ca_28185 I 0.742
evm.TU.supercontig_7.269 Carica papaya evm.TU.supercontig_7.269 I 0.742
gene25758-v1.0-hybrid Fragaria vesca gene25758-v1.0-hybrid I 0.742
mgf026339m Mimulus guttatus mgf026339m I 0.741
MDP0000174352 Malus domestica MDP0000174352 I 0.740
GLYMA14G22740 Glycine max GLYMA14G22740 I 0.739
PRUPE_ppa009533mg Prunus persica PRUPE_ppa009533mg I 0.739
TCM_037194 Theobroma cacao TCM_037194 I 0.739
VIT_04s0008g03400 Vitis vinifera VIT_04s0008g03400 I 0.739
Pm005151 Prunus mume Pm005151 I 0.739
29794.m003381 Ricinus communis 29794.m003381 I 0.739
cassava17185.m1 Manihot esculenta cassava17185.m1 I 0.739
cassava18256.valid.m1 Manihot esculenta cassava18256.valid.m1 I 0.739
Ciclev10009370m.g Citrus clementina Ciclev10009370m.g I 0.739
gene08838-v1.0-hybrid Fragaria vesca gene08838-v1.0-hybrid I 0.739
MDP0000241650 Malus domestica MDP0000241650 I 0.739
MDP0000242611 Malus domestica MDP0000242611 I 0.739
orange1.1g027107m.g Citrus sinensis orange1.1g027107m.g I 0.739
SapurV1A.0291s0070 Salix purpurea SapurV1A.0291s0070 I 0.739
PK28082.1 Cannabis sativa PK28082.1 I 0.739
GLYMA15G02130 Glycine max GLYMA15G02130 I 0.737
MTR_3g110205 Medicago truncatula MTR_3g110205 I 0.737
PGSC0003DMG400007025 Solanum tuberosum PGSC0003DMG400007025 I 0.737
Solyc05g050830.1 Solanum lycopersicum Solyc05g050830.1 I 0.737
Eucgr.C00546 Eucalyptus grandis Eucgr.C00546 I 0.737
Thhalv10015895m.g Eutrema salsugineum Thhalv10015895m.g I 0.737
AMTR_s00056p00064760 Amborella trichopoda AMTR_s00056p00064760 I 0.736
DREB3 Arabidopsis thaliana AT5G11590 I 0.736
Bo9g170060 Brassica oleracea Bo9g170060 I 0.736
Bra008952 Brassica rapa Bra008952 I 0.736
TINY2 Arabidopsis lyrata fgenesh2_kg.6__1130__AT5G11590.1 I 0.736
GLYMA17G27520 Glycine max GLYMA17G27520 I 0.736
Bostr.20055s0079 Boechera stricta Bostr.20055s0079 I 0.736
Carubv10003136m.g Capsella rubella Carubv10003136m.g I 0.736
Gorai.010G106600 Gossypium raimondii Gorai.010G106600 I 0.736
AMTR_s00111p00051610 Amborella trichopoda AMTR_s00111p00051610 I 0.735
GLYMA06G08990 Glycine max GLYMA06G08990 I 0.734
GLYMA13G43210 Glycine max GLYMA13G43210 I 0.734
GLYMA04G08901 Glycine max GLYMA04G08901 I 0.733
Eucgr.C02928 Eucalyptus grandis Eucgr.C02928 I 0.729
Bo2g010530 Brassica oleracea Bo2g010530 I 0.726
Bo8g095240 Brassica oleracea Bo8g095240 I 0.726
Bra007539 Brassica rapa Bra007539 I 0.726
mgf024703m Mimulus guttatus mgf024703m I 0.726
Thhalv10006200m.g Eutrema salsugineum Thhalv10006200m.g I 0.726
Ca_14911 Cicer arietinum Ca_14911 I 0.725
Bra023332 Brassica rapa Bra023332 I 0.724
Cla022553 Citrullus lanatus Cla022553 I 0.724
MTR_1g006660 Medicago truncatula MTR_1g006660 I 0.722
PGSC0003DMG400002235 Solanum tuberosum PGSC0003DMG400002235 I 0.721
Solyc08g066660.1 Solanum lycopersicum Solyc08g066660.1 I 0.721
Cucsa.161310 Cucumis sativus Cucsa.161310 I 0.721
Gorai.004G289800 Gossypium raimondii Gorai.004G289800 I 0.721
GSMUA_Achr10G27680_001 Musa acuminata GSMUA_Achr10G27680_001 I 0.719
PGSC0003DMG400004825 Solanum tuberosum PGSC0003DMG400004825 I 0.718
PGSC0003DMG400018581 Solanum tuberosum PGSC0003DMG400018581 I 0.718
Solyc08g078410.1 Solanum lycopersicum Solyc08g078410.1 I 0.718
Solyc08g078420.1 Solanum lycopersicum Solyc08g078420.1 I 0.718
Ca_18948 Cicer arietinum Ca_18948 I 0.718
Lus10004738.g Linum usitatissimum Lus10004738.g I 0.714
Lus10007799.g Linum usitatissimum Lus10007799.g I 0.714
BGIOSGA016882 Oryza indica BGIOSGA016882 I 0.710
OGLUM02G27010 Oryza glumaepatula OGLUM02G27010 I 0.710
OGLUM04G20750 Oryza glumaepatula OGLUM04G20750 I 0.710
OMERI02G25900 Oryza meridionalis OMERI02G25900 I 0.710
OMERI04G17260 Oryza meridionalis OMERI04G17260 I 0.710
ONIVA02G28960 Oryza nivara ONIVA02G28960 I 0.710
ONIVA04G19040 Oryza nivara ONIVA04G19040 I 0.710
OPUNC02G24210 Oryza punctata OPUNC02G24210 I 0.710
OPUNC04G18500 Oryza punctata OPUNC04G18500 I 0.710
ORGLA02G0228000 Oryza glaberrima ORGLA02G0228000 I 0.710
ORGLA04G0178600 Oryza glaberrima ORGLA04G0178600 I 0.710
ORUFI04G22400 Oryza rufipogon ORUFI04G22400 I 0.710
OS02G0656600 Oryza sativa OS02G0656600 I 0.710
OS04G0549700 Oryza sativa OS04G0549700 I 0.710
Sb06g024530 Sorghum bicolor Sb06g024530 I 0.710
Si010703m.g Setaria italica Si010703m.g I 0.710
Traes_2AL_45E6314EF Triticum aestivum Traes_2AL_45E6314EF I 0.710
Traes_2BL_593E1CCC2 Triticum aestivum Traes_2BL_593E1CCC2 I 0.710
Pavir.Ga01095 Panicum virgatum Pavir.Ga01095 I 0.710
Pavir.J17742 Panicum virgatum Pavir.J17742 I 0.710
chr1.CM0171.140.nc Lotus japonicus chr1.CM0171.140.nc I 0.710
chr3.LjT42M03.60.nd Lotus japonicus chr3.LjT42M03.60.nd I 0.710
BGIOSGA016884 Oryza indica BGIOSGA016884 I 0.708
BRADI3G50620 Brachypodium distachyon BRADI3G50620 I 0.708
LPERR02G21590 Leersia perrieri LPERR02G21590 I 0.708
MLOC_3095 Hordeum vulgare MLOC_3095 I 0.708
OGLUM02G27070 Oryza glumaepatula OGLUM02G27070 I 0.708
OGLUM04G20790 Oryza glumaepatula OGLUM04G20790 I 0.708
OMERI02G25910 Oryza meridionalis OMERI02G25910 I 0.708
OMERI04G17290 Oryza meridionalis OMERI04G17290 I 0.708
ONIVA02G28990 Oryza nivara ONIVA02G28990 I 0.708
ONIVA04G19090 Oryza nivara ONIVA04G19090 I 0.708
OPUNC02G24230 Oryza punctata OPUNC02G24230 I 0.708
OPUNC04G18530 Oryza punctata OPUNC04G18530 I 0.708
ORGLA04G0179000 Oryza glaberrima ORGLA04G0179000 I 0.708
ORUFI02G28010 Oryza rufipogon ORUFI02G28010 I 0.708
ORUFI04G22430 Oryza rufipogon ORUFI04G22430 I 0.708
OS02G0657000 Oryza sativa OS02G0657000 I 0.708
OS04G0550200 Oryza sativa OS04G0550200 I 0.708
PGSC0003DMG400004826 Solanum tuberosum PGSC0003DMG400004826 I 0.708
Si012254m.g Setaria italica Si012254m.g I 0.708
Traes_6DL_3019F176A Triticum aestivum Traes_6DL_3019F176A I 0.708
Pavir.Ga01093 Panicum virgatum Pavir.Ga01093 I 0.708
Pavir.Gb01128 Panicum virgatum Pavir.Gb01128 I 0.708
gene08873-v1.0-hybrid Fragaria vesca gene08873-v1.0-hybrid I 0.707
LjT33K05.60.nd Lotus japonicus LjT33K05.60.nd I 0.707
BRADI3G50630 Brachypodium distachyon BRADI3G50630 I 0.706
GRMZM2G172936 Zea mays GRMZM2G172936 I 0.706
LPERR04G16900 Leersia perrieri LPERR04G16900 I 0.706
cassava17387.m1 Manihot esculenta cassava17387.m1 I 0.706
30174.m008790 Ricinus communis 30174.m008790 I 0.705
Bo9g011210 Brassica oleracea Bo9g011210 I 0.704
Bra036552 Brassica rapa Bra036552 I 0.704
Ciclev10024602m.g Citrus clementina Ciclev10024602m.g I 0.704
orange1.1g023148m.g Citrus sinensis orange1.1g023148m.g I 0.704
Thhalv10004870m.g Eutrema salsugineum Thhalv10004870m.g I 0.704
TCM_005639 Theobroma cacao TCM_005639 I 0.703
Gorai.007G087100 Gossypium raimondii Gorai.007G087100 I 0.703
SapurV1A.0033s0230 Salix purpurea SapurV1A.0033s0230 I 0.702
ERF034 Arabidopsis thaliana AT2G44940 D 0.701
fgenesh2_kg.4__2683__AT2G44940.1 Arabidopsis lyrata fgenesh2_kg.4__2683__AT2G44940.1 I 0.701
MLOC_75601 Hordeum vulgare MLOC_75601 I 0.701
POPTR_0002s14210 Populus trichocarpa POPTR_0002s14210 I 0.701
PRUPE_ppa009812mg Prunus persica PRUPE_ppa009812mg I 0.701
Traes_6DL_901793D6D Triticum aestivum Traes_6DL_901793D6D I 0.701
Pm017610 Prunus mume Pm017610 I 0.701
Bostr.25993s0277 Boechera stricta Bostr.25993s0277 I 0.701
Cagra.0239s0048 Capsella grandiflora Cagra.0239s0048 I 0.701
Carubv10023699m.g Capsella rubella Carubv10023699m.g I 0.701
Gorai.001G176500 Gossypium raimondii Gorai.001G176500 I 0.701
Thhalv10001792m.g Eutrema salsugineum Thhalv10001792m.g I 0.701
Aquca_011_00566 Aquilegia coerulea Aquca_011_00566 I 0.700
Gorai.004G165300 Gossypium raimondii Gorai.004G165300 I 0.699
BGIOSGA016883 Oryza indica BGIOSGA016883 I 0.698
OBART04G20820 Oryza barthii OBART04G20820 I 0.698
OGLUM04G20760 Oryza glumaepatula OGLUM04G20760 I 0.698
OMERI04G17270 Oryza meridionalis OMERI04G17270 I 0.698
ONIVA04G19060 Oryza nivara ONIVA04G19060 I 0.698
OPUNC04G18520 Oryza punctata OPUNC04G18520 I 0.698
ORGLA04G0178700 Oryza glaberrima ORGLA04G0178700 I 0.698
ORUFI04G22410 Oryza rufipogon ORUFI04G22410 I 0.698
OS04G0549800 Oryza sativa OS04G0549800 I 0.698
GSMUA_Achr1G01620_001 Musa acuminata GSMUA_Achr1G01620_001 I 0.697
Lus10038270.g Linum usitatissimum Lus10038270.g I 0.697
Bo4g024220 Brassica oleracea Bo4g024220 I 0.695
Bo4g195280 Brassica oleracea Bo4g195280 I 0.695
Bra004878 Brassica rapa Bra004878 I 0.695
Bra040333 Brassica rapa Bra040333 I 0.695
ORUFI10G19670 Oryza rufipogon ORUFI10G19670 I 0.695
Lus10025834.g Linum usitatissimum Lus10025834.g I 0.694
Pavir.Aa00834 Panicum virgatum Pavir.Aa00834 I 0.694
TCM_014892 Theobroma cacao TCM_014892 I 0.693
cassava19875.m1 Manihot esculenta cassava19875.m1 I 0.692
cassava19912.m1 Manihot esculenta cassava19912.m1 I 0.692
Bo4g036220 Brassica oleracea Bo4g036220 I 0.691
Bra005314 Brassica rapa Bra005314 I 0.691
ATERF38 Arabidopsis lyrata fgenesh2_kg.4__1597__AT2G35700.1 I 0.691
Cla015715 Citrullus lanatus Cla015715 I 0.691
Cagra.0993s0081 Capsella grandiflora Cagra.0993s0081 I 0.691
Carubv10024111m.g Capsella rubella Carubv10024111m.g I 0.691
Thhalv10017258m.g Eutrema salsugineum Thhalv10017258m.g I 0.691
Q3HS43_BRANA Brassica napus Q3HS43_BRANA D 0.691
Q3HS44_BRANA Brassica napus Q3HS44_BRANA D 0.691
Q5MAR7_BRANA Brassica napus Q5MAR7_BRANA D 0.691
F775_04501 Aegilops tauschii F775_04501 I 0.690
Traes_2AL_43491B9E0 Triticum aestivum Traes_2AL_43491B9E0 I 0.690
Traes_2BL_FC0F8A3DC Triticum aestivum Traes_2BL_FC0F8A3DC I 0.690
Traes_2DL_A336122501 Triticum aestivum Traes_2DL_A336122501 I 0.690
ERF035 Arabidopsis thaliana AT3G60490 D 0.689
fgenesh2_kg.5__2513__AT3G60490.1 Arabidopsis lyrata fgenesh2_kg.5__2513__AT3G60490.1 I 0.689
Eucgr.D02102 Eucalyptus grandis Eucgr.D02102 I 0.689
Bostr.23794s0528 Boechera stricta Bostr.23794s0528 I 0.687
GSMUA_Achr1G04350_001 Musa acuminata GSMUA_Achr1G04350_001 I 0.686
PK01156.1 Cannabis sativa PK01156.1 I 0.686
Bostr.13158s0050 Boechera stricta Bostr.13158s0050 I 0.685
Cla012859 Citrullus lanatus Cla012859 I 0.684
28353.m000054 Ricinus communis 28353.m000054 I 0.684
Cucsa.038760 Cucumis sativus Cucsa.038760 I 0.684
Cagra.3527s0003 Capsella grandiflora Cagra.3527s0003 I 0.684
Carubv10017799m.g Capsella rubella Carubv10017799m.g I 0.684
Bo3g037480 Brassica oleracea Bo3g037480 I 0.683
Bra000366 Brassica rapa Bra000366 I 0.683
Pm013463 Prunus mume Pm013463 I 0.683
mgf024816m Mimulus guttatus mgf024816m I 0.683
MTR_2g101340 Medicago truncatula MTR_2g101340 I 0.682
Ca_12765 Cicer arietinum Ca_12765 I 0.682
gene04810-v1.0-hybrid Fragaria vesca gene04810-v1.0-hybrid I 0.682
cassava33300.m1 Manihot esculenta cassava33300.m1 I 0.681
evm.TU.supercontig_101.39 Carica papaya evm.TU.supercontig_101.39 I 0.681
gene08876-v1.0-hybrid Fragaria vesca gene08876-v1.0-hybrid I 0.681
Gorai.003G063500 Gossypium raimondii Gorai.003G063500 I 0.681
Bo1g009990 Brassica oleracea Bo1g009990 I 0.680
Bra011383 Brassica rapa Bra011383 I 0.680
Traes_2AL_0F08552FB Triticum aestivum Traes_2AL_0F08552FB I 0.680
Traes_2BL_984787AC0 Triticum aestivum Traes_2BL_984787AC0 I 0.680
Ciclev10027587m.g Citrus clementina Ciclev10027587m.g I 0.680
Gorai.004G196700 Gossypium raimondii Gorai.004G196700 I 0.680
Gorai.009G136500 Gossypium raimondii Gorai.009G136500 I 0.680
orange1.1g038538m.g Citrus sinensis orange1.1g038538m.g I 0.680
OB04G27840 Oryza brachyantha OB04G27840 I 0.679
evm.TU.supercontig_89.73 Carica papaya evm.TU.supercontig_89.73 I 0.679
Gorai.009G050200 Gossypium raimondii Gorai.009G050200 I 0.679
TCM_015930 Theobroma cacao TCM_015930 I 0.678
Bostr.30275s0134 Boechera stricta Bostr.30275s0134 I 0.678
Carubv10005867m.g Capsella rubella Carubv10005867m.g I 0.678
Bra037041 Brassica rapa Bra037041 I 0.677
Solyc06g066540.1 Solanum lycopersicum Solyc06g066540.1 I 0.677
TCM_028851 Theobroma cacao TCM_028851 I 0.677
Eucgr.F03062 Eucalyptus grandis Eucgr.F03062 I 0.677